Paludibacter propionicigenes: Palpr_0154
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Entry
Palpr_0154 CDS
T01362
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Palpr_0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppn03019
]
Palpr_0154
03009 Ribosome biogenesis [BR:
ppn03009
]
Palpr_0154
Enzymes [BR:
ppn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Palpr_0154
Messenger RNA biogenesis [BR:
ppn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Palpr_0154
Ribosome biogenesis [BR:
ppn03009
]
Prokaryotic type
rRNA helicases
Palpr_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADQ78316
UniProt:
E4T0F7
LinkDB
All DBs
Position
183214..185079
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AA seq
621 aa
AA seq
DB search
MTFRELNLKDDILSAIEELGYAQPMPVQEKTIPFMLEQTADLVALAQTGTGKTAAFGLPV
LNMIDAGRKQVQALVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQLRQLDT
APQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETRRTM
LFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQARQRYLVLKRIVDLNP
DIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQLLVATDV
AARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIKDIERML
RKTFIQEQIPNGLEVCKKQLFYMIDRMENVEVSEEQIETYMPQIMKQLEYLSKEELLKRF
VSLEFNRFLSYYKNAEDLNLPERSERGERGERNGDRNDRGSKSGGKVRLKMNVGEREGID
PKRFLGIINDVTGDKSISIGSIEVTNKFTFFDVFSDQVEKVVMAFAGETDYIVAEAKGSK
SFEGGGSRKPEYRARGSYGGSRSGGGYRGGDRESRPAATAGAGEKPWRNRDLGDRSSRPS
GGSDRRSSSSYKGGSSSYKKR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgacatttagagaattgaatttgaaggacgatatattatcggccatcgaagaacttggg
tacgcgcaacctatgcccgtacaggaaaaaaccatccctttcatgcttgaacaaacggct
gatttggtggctttagcgcaaacgggtactggtaaaactgcagcttttgggttgccggta
ctgaacatgatagatgctggtcgcaaacaggtgcaggctttagtgttggctcctacacgc
gaattgtgtattcagatagcaaacgacttgaaaggctattcaaagaatatgcgcggtatg
cgtatcgtgccggtttatggaggtgaagatattcgtacgcaactacgtcagttggatact
gctcctcaaattatcgtagctactcccggtcgtcttatcgatctgattgagcgtggaaaa
atcgaattaggagctattgactttttggttcttgatgaagctgatgaaatgctcaatatg
ggtttcaaggaagatattgaaactattttggagcgtactccggaaacgcgtcgtacgatg
cttttttcggctacaatgcctaaggaaatagccaatatagctaaacgctatatgaagaat
tacgaagaaataactgttggaactaaaaatgcaggttcggaaaatgtagaacatatatat
tacgtatcgcaagccagacaacgttatttagtgttgaaacgtattgtagatttaaatccg
gatatttacggtattgtattctgtcgtacccgtcaggaaaccaaagaagtagcggataaa
ctgatgcacgatggttataatgcagatgcactacacggagacctttctcaggctcagcgg
gataatgtgatgcaaaaattcagaatcagaaatattcagttgcttgttgctaccgatgtt
gctgcacgtggattggatgttagtgatcttacccacgtaatcaactataacttgccggat
gatgtagaggtttatacacaccgaagcggtcgtacaggtcgtgccaataaaaaaggtata
gctgtatctattatccattctaaagagcgattcaaaatcaaagatattgaacgtatgctt
cggaagacctttattcaggagcaaattcctaatggattggaagtgtgtaagaaacaattg
ttttatatgattgaccgcatggaaaatgtggaagttagcgaagaacagattgaaacttat
atgcctcagattatgaaacaattggaatatctgagcaaggaagaattgctcaaacgcttt
gtttcattggaatttaaccgttttttgagttattacaagaatgccgaagatttgaacttg
ccggaacgtagcgaacgtggtgagcgaggtgaacgtaatggcgatagaaatgatcgtggt
tctaaatccggtggcaaggttagattgaaaatgaatgtaggtgagcgcgaaggtatcgat
ccaaaacgttttctgggaattataaatgatgtaaccggcgataagtcgattagtatcgga
tcaatagaagtaaccaacaaatttacattcttcgatgttttctccgatcaggtagaaaaa
gtagtgatggcgtttgccggtgaaaccgattatattgtagctgaagccaaaggaagtaaa
tctttcgaaggtggtggtagccgtaaacctgagtatcgtgctcgtggaagttatggcggt
agccgttcaggaggcggatatcgtggaggtgatcgggaatcgcgtccggctgcaacagca
ggtgccggtgaaaaaccatggcgtaaccgtgatttgggcgatagaagtagccgtccttca
ggaggaagtgaccgtagaagtagctcaagctataaaggcggttcttcttcatacaagaag
agataa
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