Paludibacter propionicigenes: Palpr_0321
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Entry
Palpr_0321 CDS
T01362
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Palpr_0321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppn03019
]
Palpr_0321
Enzymes [BR:
ppn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Palpr_0321
Messenger RNA biogenesis [BR:
ppn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Palpr_0321
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADQ78483
UniProt:
E4T097
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All DBs
Position
387746..389101
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AA seq
451 aa
AA seq
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MTFDKLDLIEPILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPIL
QLLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVG
ALKMGVDILIATPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAK
RQSLFFSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLL
QDKSIKTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTRVLV
ATDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAEEHEYLRDI
QKLISIQIPVIKDHPFPAENMPVVGKSKSKSKPNQNIRQPNPNKPKITHNRAPISKAATD
SAAEPRKVIAPPVKNEAPAKPVVSKKFWGRK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgataaattagatcttatagagccgatcttaaacgctctctctcacgaaggt
tatactcaacctacacctattcaggaaatttcaattccaattgtacttaaaggacatgat
ttattaggctgtgctcagacaggcacaggtaaaacagctgcttttgctattcctatcctg
cagttgttgcaattaaataaaggagccgaaagagctccacgcaaaatcaaagcattgatt
gtaactcctacgcgcgaactggctatccagattggcgaaagctttgcagcctacggtcga
tttatgaatttgcggcataccgttatctttggtggtgtaccgcaaggagcacaagttggc
gcacttaaaatgggcgttgacatactgatagctacaccgggtcgtttactcgatttgcaa
acacagggatatgtgaagttgaatgagctttctatattcgtattggatgaagccgatcgt
atgcttgatatgggattcatacatgatgtaaaaaaactgattaaaatcattcctgctaag
cgtcaatcgcttttcttttcggctactatgcccgaatcgatacgagtgctggccggttca
atccttacgaatcccgaagaagtggctgttactccggtttcaaccactgccgaaactatt
cagcaagaaatgtattttgtggatgcagtcaacaaaaaggatttgttgatacatttgttg
caggataaatcaattaaaactgctttggtgtttacgcgcaccaaacatggtgcggataag
gtacagcgtttgctcacgaaagctagaattaaagcagaagcaattcatggcaataagtct
caaaatgcccgtcagaatgcgttgcgaaattttaaagacagaacaacgcgtgttttggta
gcaaccgatatcgcagcacgtggtattgatattgatgatttgaatcttgttattaattat
gaaatcccgaatatccctgaaacctatgttcaccgtataggacgtacaggtagggcagga
ctggatggaaaggctgtgtcgttttgcgatgctgaagagcatgaatacctgcgcgatatt
caaaagctaatttctattcagattccggtaattaaagaccatccgtttccggctgaaaac
atgcccgtagttggtaaatccaagtcgaaatcaaaaccaaatcagaatatccgtcagcct
aacccgaataaacccaaaattacacacaatagagcgccgataagcaaagctgctacagac
agtgccgctgaacccagaaaagtaattgctccacctgtgaaaaacgaagctccagcgaaa
cctgtagtttcaaagaaattttggggtagaaagtaa
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