Paludibacter propionicigenes: Palpr_0814
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Entry
Palpr_0814 CDS
T01362
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Palpr_0814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_0814
Enzymes [BR:
ppn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Palpr_0814
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Palpr_0814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADQ78968
UniProt:
E4T2M4
LinkDB
All DBs
Position
complement(965900..969241)
Genome browser
AA seq
1113 aa
AA seq
DB search
MTLSDFQQLYAQHPQVKELVSWASSSEQNIKISGLSGSSCALVAASLFKAHSNTQILVMN
DADDAAYLYNDLKQILSTEEVFFFPSSYKRAIKLSQLDAANEILRTEVLNRLANTSSPIV
VVTYPESLMQKVVSAGSMQTRMLRMHTGEGLSLNFVVEMLIEYGFERVDFVYEPGQFSVR
GSIVDIFSYANELPYRCDFFGDEIETIRVFDIETQLSQEKKSEIIIIPDLQSDTESPHVS
FFEFVPKLTWFSFANAAFVRERINLLYNEALVKANETGQKTSNLLQIQITGEQFVEQVQD
FRIIEWNDKAYFQHKSVIGFNTSPQPIFHKNFDLVSDNLKQKLNEGYKLYILSDSVKQTD
RIAAIFADRGDVIPFQPIKNTLHEGFVDHDLSLLCYTDHQIFDRFHKFQLKTDKTRLGKV
VMTLKELNQFQIGDYMVHVDHGVGTFGGLIKTNVNGKMQEMVKLVYKDDDIIFVSIHALH
RISKYKGKEGESPRINKLGSGAWERLKERTKSKVKDIARELIKLYAKRKAEQGFQFSPDS
YLQQELEASFIYEDTPDQIKSTADVKKDMESTLPMDRLVCGDVGFGKTEVAIRAAFKAVT
DSKQVAVLVPTTVLALQHYNTFKDRLKDFPCSIEYLSRARTAKQTKEVLDRLEKGDVDIV
IGTHKLVGKSVKFNDLGLLIIDEEQKFGVSVKEKLKEMKVNVDTLTMTATPIPRTLQFSL
MGARDLSIINTPPPNRYPVQTEVHVFDEDVIREAIQLEMNRNGQVFFVNNRIQNIYNIEA
MIRRLVPGCRVAVGHGQMPADKLEEIIVDFIDYEYDVLVATTIIESGIDISNANTIIINS
AHNFGLSDLHQLRGRVGRSNRKAFCYLLAPELSLLTPEARRRLQALETFAELGSGFNIAM
QDLDIRGAGNMLGAEQSGFIADLGYETYQKILNEAVHELKDEEFADLYADERKENASSTA
FVNDCQIDSDLEVMFSGEYIENVSERISLYRELDNIDSEDELLEFEKRLVDRFGKIPTEG
QSLILVVRLRWLAMRLGIEKLVLKNERMTAFLVSNPQSVYYQSEPFGRLLQYMTSHPRKC
QLREQNQRRSVVFSEVKTVEKAFEVLSEIVPFS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgactctttctgattttcaacaactttatgctcaacatccacaggtaaaagaacttgta
agttgggcttcttcatccgaacagaatataaaaatttctggtttgagcggatcatcgtgc
gctttagtggccgcatcgcttttcaaagctcatagtaatacacagattttggtgatgaac
gatgctgacgatgccgcatatctttacaatgatttgaagcaaattctttcaaccgaagaa
gtgtttttctttccgtcttcctataagcgagcaattaagctctctcaactggatgcagca
aatgaaattcttcgaactgaagttttgaatcggcttgcgaatacctcctcaccaattgtg
gttgttacctatcccgaatcgttgatgcaaaaggtggtatcggccgggagtatgcagacc
cgtatgttgcgaatgcacacaggcgaaggtctcagcctgaatttcgtagtggaaatgctg
attgaatacggatttgagcgggttgattttgtttatgaaccgggtcagttttccgttcgg
ggtagtattgttgatattttctcgtatgccaacgaattgccttaccgctgtgatttcttc
ggagacgaaattgagaccattcgggtttttgatatagaaactcagctatcgcaagagaag
aaatcagagataataataattcctgatttacaaagtgatacggagtctccacacgtatct
ttttttgaatttgttcctaaactaacctggtttagttttgcgaatgcggcctttgttcgg
gaaaggattaacctgttgtataacgaagcgttggttaaagctaatgaaacagggcaaaaa
acttcaaatttattgcagattcagattaccggcgaacaatttgtagaacaggttcaggat
tttagaattatagagtggaacgataaagcatatttccagcataaatcagtaatcgggttt
aatacttcaccacaacctatttttcataagaactttgatttagtctctgataatttaaaa
caaaaactaaacgaagggtacaagctttacattcttagcgatagtgttaaacaaactgat
cgtatagctgccatttttgcggacagaggagatgtaataccatttcaaccgataaaaaat
accttgcacgaaggattcgtcgatcatgatttatccttattgtgttatacagatcatcag
atttttgaccgcttccataagttccagctcaaaacggataaaactagacttggaaaagtt
gttatgactcttaaggagttgaatcagtttcaaattggtgattacatggtgcacgttgac
catggtgtaggtacattcggaggattgataaagactaacgtgaatgggaaaatgcaggaa
atggtaaaactcgtttacaaggacgatgatattatttttgtaagtatccatgcgcttcac
cgtatctcgaaatacaagggaaaagaaggtgaatcgccacgcatcaataaacttggttca
ggagcctgggagcgcctgaaagagcgcaccaagtcgaaagtaaaagatatagcgcgtgag
cttattaagttgtatgccaaacgaaaagcggagcagggatttcagttttcgccggacagt
tacttgcagcaagagctggaagcttcttttatatatgaagatacgccagatcagataaaa
tctaccgcagatgtaaaaaaagacatggaatcgacattacccatggacagacttgtttgc
ggcgatgtgggctttggcaaaaccgaagtggccattcgggcagcttttaaggctgttaca
gacagcaagcaggttgcagtacttgttcctaccactgtgctcgctttgcagcattacaat
acgtttaaagatcgtctgaaagattttccgtgttctatagagtatctcagtcgggcccgt
acagcaaaacaaaccaaggaagtgttggacagattggaaaaaggcgacgttgatatcgtt
attggtacacataagttggtaggcaaaagtgtaaaattcaatgatctgggtcttttgata
atagatgaggaacaaaagtttggtgtgtctgtaaaggaaaaactaaaagaaatgaaagta
aatgtggatacacttaccatgacagctactcctattccccgtacgctacaattttcattg
atgggagcacgcgatttatccattataaatactcctcctcctaatcgttatcctgtgcaa
acagaagtacatgtgtttgacgaggatgtcatacgtgaagctattcagttggagatgaac
aggaatggacaggtattttttgtcaataatcgtattcagaatatttataatatcgaggcg
atgatccgtaggctggtgccgggctgtcgtgtggcggttggtcatgggcaaatgcctgcc
gacaagctggaagaaataattgttgattttatagattatgagtacgatgtgctggttgca
actaccattattgaatctggaattgatatttcaaatgccaataccattattataaacagt
gcacacaacttcgggttgagcgatctgcatcagttgcggggcagggtagggagaagcaac
cgaaaagctttctgctatctgttggctccggaattaagcttgttgactccggaagcaaga
cgacgtctacaggctttggaaacttttgcagaacttggaagcgggttcaatatagctatg
caggatttagacattcgcggagcgggaaatatgctgggagccgaacaaagtggatttata
gctgatttgggttatgagacctatcagaaaattctgaacgaagcagttcatgaattgaaa
gatgaagaatttgccgatttgtatgctgatgaacgtaaggagaatgcaagctctacagct
tttgttaatgattgtcagatcgattccgatttggaggtgatgttttcaggtgagtatatt
gagaatgtttctgaacgtataagtttataccgggagctggataatatcgatagtgaagat
gagctacttgagtttgaaaagcgtttggttgaccgatttgggaaaataccgactgaagga
cagagtcttatcctggtcgttcgattgcgttggttggctatgcgcttagggatagagaaa
ctggtgttgaaaaatgaacgaatgactgctttccttgtctcaaatcctcaatcggtttat
tatcaatccgaaccatttggacgtttattgcagtatatgacatcgcatcctcggaaatgt
cagctcagagagcagaatcagagacgctcggttgtgttttcagaggtgaaaacggtagaa
aaggcatttgaggttttgtcggagattgtacctttctcttga
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