Paludibacter propionicigenes: Palpr_1726
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Entry
Palpr_1726 CDS
T01362
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Palpr_1726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppn03021
]
Palpr_1726
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_1726
Enzymes [BR:
ppn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Palpr_1726
Transcription machinery [BR:
ppn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Palpr_1726
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Palpr_1726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADQ79865
UniProt:
E4T571
LinkDB
All DBs
Position
2065524..2069819
Genome browser
AA seq
1431 aa
AA seq
DB search
MAFKNDNKVKSNFNKISIGLASPEEILKLSSGEVLKPETINYRTYKPERDGLFCERIFGP
TKDFECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDSIIYYEKYVIIQGGILENGENITQGELLSEDEYLDILEALPRENQLLD
DNDPEKFIAKMGADAIYDLLSRLDLDVLSYDLRHKANNDTSQQRKNEALKRLQIVESFRA
SKLRNKPEWMIIKIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKA
PEVILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPELKMHECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKDPV
IWDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMA
VHLPLGNEAILEAQMLMLGSHNILNPANGAPITVPSQDMVLGLYYITKPRPGALGEGLIF
YSPEEAEIAYNEKKVALHAPIKVKTLDLNAEGDLELQLIETTVGRILFNKCVPPQVGYIN
ELLSKKSLRDIIGNVIDICGVARTTQFLDDIKDLGYYMAFKGSLSFNLADVIIPPEKETL
VKEGNAEVEEILNNYNMGFITFNERYNQIIDTWTHVNSKLSNILMKQLSSDNQGFNSVYM
MLDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHG
ARKGLADTALKTADAGYLTRRLVDVSQDVIINEDDCGTLRGLIATEMKNNEEVISSLYER
ILGRVSVHDIYHPLTAELLVASGEQITEVHARKIQDSPIERVEIRSVLTCESKKGVCAKC
YGRNLATGKMVHIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVASNVGAESKITLRYDGRL
EFEELRTVDAVEDNKDTYQVVVSRLAEMRVVDVNTGIALTTQNIPYGSKLYVKDGDLATK
GQVVCEWDPFNAVIISETDGKIEFEDVIEGVTFKTETDDATGLREKILIESKDRNKVPSA
HIVSKDGSILRTYNLPVGAHLVLDNGDKIKTGQMLVKIPRAVGKAGDITGGLPRVTELFE
ARNPSNPAVVAEIDGEVTFGKIKRGNRELTVTSKTGEIKKYMIPLSRQILVQENDFVRAG
TPLSDGATTPSDILLIKGPTAVQDYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEIL
EQGDTRFLEKQIVDKHDFMEENDRIWGKKVILDAGDSATLKPGQIITARKLRDENSMLKR
RDMKLVETRDAIAATSNQILQGITRAALQTNSFMSAASFQETTKVLNDAAINGKVDRLEG
LKENVICGHLIPAGTGQRDFDKIVVYSRDEYDKKVDARKNVLDIEESETEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaaaatgataataaggtaaagagtaattttaataaaatttcgattggtctt
gcatcacccgaagagatattaaaattatcgagtggcgaggttctcaaacccgaaaccatt
aattatcgtacctacaaaccagagcgtgatggtctgttctgcgaacgcattttcggtcca
actaaggattttgaatgtcattgcggaaaatataaacgtatccgttacaaaggcattgtc
tgcgaccgttgtggtgtagaagtgactgagaaaaaagttcgtcgtgaacgtatgggacac
atccaattggttgtacctgtagcccacatctggtatttccgctcattgccgaacaaaatc
ggttacctgcttggaatgccaaccaagaaacttgattcaattatttattacgaaaaatat
gtcatcattcagggaggaattcttgaaaatggcgaaaacattacgcaaggcgaattactt
tcagaagacgaatatcttgatattctggaagcacttccacgtgaaaatcaattgttggat
gacaacgacccagaaaagttcattgctaaaatgggggctgatgctatctacgatttattg
agtcgcttggatttggatgttttatcatacgacctacgtcataaagctaataacgacact
tcgcaacaacgtaaaaacgaagccttgaaacgtctgcaaattgtagaatctttccgtgct
tctaagttacgtaacaaacctgagtggatgatcattaagattgttccggttattccacct
gaattgcgtccattggtaccacttgatggtggtcgtttcgctacttcggatttgaatgac
ctgtatcgtcgtgttattattcgtaacaatcgtttgaaacgattaattgaaatcaaagct
ccggaagtaattttacgtaacgaaaaacgtatgcttcaggaagctgtggattcattgttc
gacaattcacgtaaatcgagtgctgttaaaaccgacgcaaaccgtccgttgaaatcgctt
tcagattcgttgaaaggtaaacaaggacgtttccgtcagaacttgttaggtaaacgtgtg
gattactcggctcgttcggtaatcgtcgttggtcctgaattaaaaatgcacgagtgcggt
atccctaaggatatggccgcagaactttataaaccgtttgtaatccgcaaattgatcgaa
cgcggaattgtaaaaacggtaaaatcggcaaagaaaattgttgatcgcaaagacccggta
atctgggatattttagagtacgtgatgaaaggacatcccgtattactaaaccgtgcccct
actcttcaccgtttaggtattcaggctttccaaccaaaaatgattgaaggaaaagcaatt
caacttcacccattggcatgtacggctttcaacgccgactttgatggtgaccagatggct
gttcacttaccgctgggtaatgaggctatattggaagctcagatgttaatgttgggatcg
cataatattcttaatcctgctaacggtgctcctattactgtaccttcgcaggacatggtt
cttggtttgtattatattaccaaaccacgtccgggagctttgggtgaaggtcttatattc
tattcgcccgaagaagcagaaatagcttacaacgaaaagaaagttgctttacatgctccg
atcaaagtaaaaactttggatctgaatgctgaaggcgatcttgagttgcaattaattgag
actacagttggacgtatattgtttaacaagtgtgttccgcctcaagtaggttatataaat
gaacttctttctaaaaaatcattgcgcgacattattggtaacgtaattgatatttgtgga
gttgcccgtactacccaatttttggatgatatcaaagatttgggttactacatggcattc
aaaggtagtttgtcgtttaacttagccgacgttattattccaccggaaaaagaaacattg
gtaaaagaaggtaatgctgaagtagaagaaattttgaataactataacatgggattcatt
accttcaacgaacgttataaccaaattattgatacttggacacacgtaaactcgaaattg
tcgaatattttgatgaagcaactttcgagtgataatcaagggttcaactctgtttatatg
atgttggattcaggtgctcgtggttctaaagaacagattcgtcagctttcaggtatgcgt
ggtttgatggcaaaacctcaaaaatcaggtgcagaaggtggacagattattgaaaaccca
attctttcgaactttaaagaaggactttcggtattggaatactttatttctacccacggt
gctcgtaaaggtttggcggatacggctcttaaaacggctgatgccggatacttaacccgt
cgtttggttgacgtttcacaagatgtgattatcaatgaagacgattgtggtacattacgt
ggtttgatcgctaccgaaatgaaaaacaacgaagaagtaatttcgtctctttacgaacgt
attcttggtcgtgtttcggttcatgatatttatcatccgcttacagctgaattattagtt
gcttcgggtgaacaaattacagaagttcatgcacgaaaaattcaagattctccaatcgaa
cgtgttgaaatccgttcggtattgacttgcgaatctaaaaaaggtgtttgtgctaaatgt
tacggacgtaacctggcaacaggaaaaatggtacacattggtgaagctgtaggtgttatt
gccgctcagtcaatcggtgaaccgggaactcagttgacacttcgtactttccacgtcggt
ggggttgcttcgaacgtcggtgcagaatctaaaataactttacgttacgatggacgcctt
gaatttgaagagcttcgtacggttgatgctgttgaagacaataaagacacttatcaggtg
gtagtaagccgtttggctgaaatgcgtgtagttgatgttaataccggaattgctctcacc
acacagaatattccttacggttctaaactgtatgtgaaagatggagatcttgcaactaaa
ggtcaggttgtctgtgagtgggatccatttaacgcggtaattatttcggaaactgatggt
aagattgaatttgaagatgtaattgaaggtgttactttcaaaactgaaacagatgatgct
accggattacgtgaaaaaattcttattgaatcaaaagatcgtaataaagttccaagtgct
cacattgtgtcaaaagatggttctattcttcgtacatacaacttaccggtgggtgcccac
ttggtcttggacaacggtgataagattaaaaccggtcaaatgttggtaaagattccacgt
gctgttggtaaagcgggtgatatcaccggtggtcttccacgtgtaactgaattattcgaa
gctcgtaacccatcgaatccagctgttgtagctgaaatcgacggtgaagtaaccttcgga
aaaatcaaacgtggtaaccgcgaattgactgtaacttcgaaaacaggtgaaatcaaaaag
tatatgattccattatctcgtcagattttggttcaggaaaatgactttgtacgtgcagga
actccgctttcggatggagcaaccacaccttcagatattttattaatcaaaggacctact
gcggttcaggattatattgtaaatgaagttcaggacgtttaccgcttacaaggtgtaaaa
atcaatgataaacactttgaggtaattgtacgtcagatgatgcgtaaagttgaaattctg
gaacaaggcgatactcgcttccttgaaaagcaaattgttgacaaacatgactttatggaa
gaaaatgatcgtatctggggtaaaaaagtaattcttgatgcaggcgattcagctacgttg
aaacccggtcagattattactgcccgtaagttacgtgatgaaaacagtatgcttaaacgc
cgtgatatgaaattagtagaaacacgcgatgcaattgctgctacttctaatcagatatta
caaggaattactcgtgctgctcttcaaaccaatagctttatgtcggctgcttctttccag
gaaactacgaaagtgctaaacgacgctgctatcaacggaaaagtagaccgcttggaagga
ttgaaagaaaacgttatttgcggacatttgattccagccggaacaggacaacgcgacttc
gacaaaatagtagtttactcacgcgatgagtacgacaagaaggttgatgcccgtaaaaat
gtactggatatagaagaaagtgaaacagaagaataa
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