Paludibacter propionicigenes: Palpr_1790
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Entry
Palpr_1790 CDS
T01362
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03030
DNA replication
ppn03430
Mismatch repair
ppn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Palpr_1790
03430 Mismatch repair
Palpr_1790
03440 Homologous recombination
Palpr_1790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppn03032
]
Palpr_1790
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_1790
Enzymes [BR:
ppn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Palpr_1790
DNA replication proteins [BR:
ppn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Palpr_1790
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Palpr_1790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
ADQ79929
UniProt:
E4T5D5
LinkDB
All DBs
Position
2153745..2157542
Genome browser
AA seq
1265 aa
AA seq
DB search
MNSFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNG
KVKGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKEGTE
DRSGYHLVLLAKNKKGYQNLCKLVSMSWIEGMYYRPRIDHDILEKYSEGLIASSACLGGE
IHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEELIKL
ARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQMWQI
FADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSEFGEG
FDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQKERIDFELEVMKTMGFPGYF
LIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFLNPDRISMPD
IDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLSEADRLTK
LIPDKFPEGADGKAPKITISNCLKYVPEMQTARNSSDLNLANTLRYAEMLEGTVRQTGVH
ACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLGLKTLSIIKE
ALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLINLQPTQFEDL
IAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQVMLLSRDLA
GFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDWAEFAKYAFN
KSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLGMNVLGPDVN
ESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIERVNLTACNKR
AMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTKNSLFGGLDS
VEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATTVDLKDLSSL
QGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALFGKNYIEFGKYMIKDLYLF
INAIVQERGADYKFKKQENTNPDIPKELELKIQKIEIFSDIKDKLINTLTLTIRLQQLTE
DFAIELNELTLQNKGNVNLYIQVVDELSPNKVMLFSRHHRIQINTKVYHALKRAQQEEIL
EFQVH
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctttgttcatcttcacgttcactctcactattcagtattggatgggatgtct
accatctcagggcttgtagataaagcttcgaaaagtgggatgcatgccgtggcactgacc
gaccacggaaatatgtttggcgttaaggagttcttcaactatgccaagaaaaaaaatggt
aaggtaaaggggcagattgccgacctacagaagcaactaaaagcggaaggcctgacggaa
gaagaaaaaacctctattctggaacaaatagaagaagccaaacacaaaatttttaaaccg
atcattggctgtgaggcctatgtagcccgccgcggacgcttatcaaaagagggtaccgaa
gacagaagcggatatcatctcgtgctactggcaaagaacaaaaaaggctatcaaaatctg
tgtaaacttgtttcgatgtcgtggattgaagggatgtattaccgtccacgcatagaccat
gatatattagagaaatacagcgaaggattgatcgcatcttctgcatgccttggaggtgag
atacacaagaaagtagaaagcggcaatatggatgaagccgagaaatcggttatgtggtac
aaaaaagtgtttggtgatgatttctatatcgaacttcaacgacacaaaaccgacaaacca
aacgcggattattctactttcgataaacaaatgcgccaaaacgaggagctcattaaactg
gcgcgtaaaaccaacactaaaatagttgctaccaacgacgtacactttgttgaagaagaa
cacggcgaagctcatgaacgtctgatatgcctaagcactggcaaggatctggacgatccg
aaccgtatgcgctataccaaacaagaatggcttaagtcgcctgagcaaatgtggcaaatc
tttgccgatatacccgaagcgcttaacaatacgttggagatagccgagaaagttgaattt
ttcgatattgactccaatgccatgatgccggtatttcccatccccgaaagctttggcact
gaagaacaataccgcgctaaattctccgaagagatgcttcgttcggaatttggagaaggt
tttgacagactaggaggatatgaaaaagcggttcgcgtaaaactggaagctgattacctg
acaaaacttgcttacgaaggtgctgccgtccgctatggcagcgagcttactgccgaccag
aaagaacgtatagattttgaactggaagtaatgaaaaccatgggtttcccgggttacttt
cttattgtacaagactttatacgagcagcccgcgacatgaaagtatcagtaggtccgggt
cgtggatcggctgcgggttcagtagtggcgtactgcctccgaattaccgacatcgatcca
cttaaatacgacttgctgtttgagcgtttcctcaatccggatcgtatctccatgcccgat
attgatattgactttgatgatgacggacgcggacaggttttgcgctgggtgactgaaaaa
tacggaaaagagcgggtagctcacatcatcacctatggaacaatggccaccaaatcatca
atcaaagatgtggcgcgtgttcagcggctaccactctcggaagccgacagattgacaaaa
cttatccctgataaatttcctgaaggagccgatggtaaagctcctaaaattaccattagt
aactgcctgaaatatgtgcccgagatgcaaactgcccgcaactcttcggacttaaatctg
gctaatactttgcggtatgcagagatgttggaaggaactgtgcgccaaaccggagtgcat
gcttgcggtgtcattattggtgccgacgacctgaccaatttagtaccgctaagtacggca
atggacaaggaaaccaatgaagaaatgctcgtaacacagtacgaggggtctgtcattgaa
gaaatagggctaataaaaatggactttttgggacttaaaaccttgtccattataaaagaa
gccctgtccaacatcaaaaaatccaaaggaattgatcttgacattgacagtattccgata
gacgattgtaaaacatacgaacttttcagcaagggattaaccgtcgggacattccagttt
gaatctgccggaatgcaaaaacaccttatcaaccttcaacctacccagttcgaagatttg
attgcgatgaatgccttgtatcgtccgggtccaatgcaatacattcctcagtttgtcaac
agaaagcacggtcgggaaaaaatagaatatccttttcctatcatggaaaaccgtttgaaa
gatacttatggtattacggtttatcaggaacaggtcatgcttttaagtcgcgacttggcc
gggtttacccgtggtcagtcggatgagcttcggaaggcgatgggcaaaaaactcatcgac
aagatggaggcgctgaaagtgaaattcatggacggatgtgagaaaaacggtttcggaccg
aaagcaaaattggaacaaatctggtccgactgggctgaatttgcgaaatatgctttcaac
aaatcgcacgccacctgttactcgtggattgcttaccagacagcatacctcaaagcacat
tatccggcagaatttatggctgccaacttaacgcgcaacaaggatgatattaccgaggtc
ggcaaattcatggacgaatgcaaaaatctgggcatgaatgtactgggtcccgatgtcaat
gaaagtgatttgacctttacagtaaacgccgatggcaatgtgcggtttggattgggagcc
atcaaaggcgtaggtgaaggagccgtagaagccattgtaaatgaaagaaatgccaatgga
aaatacaccagcatgttcaatcttattgaacgcgtgaacctgactgcctgcaacaaaaga
gctatggaaagtctggcattatcgggtgcattcgatagtttttcagatgtgcatcgcgaa
cagctttttgtagagaacagcaaaggcgagcaggttctcgagtctatacttcgctacgga
aataaatatcagaccgatctggcgatgacaaagaattcattgtttggcggactggattcg
gttgaaattaccaagcctgaaattccgtatgcccctgagtggtcgccgcttgaaaaacta
aataaagagcgtgatctgattggcatgtacctctctgctcacccgttggatgaatatgag
tttgagattaatcatatatgcaatgccaccactgtagacctgaaagatttatcgagcttg
cagggtaaaggactgaaaataggcggaatggttaccaatttccgacacgggacatcgaaa
gcaggaaatccctatggaattttcacgctggaagattatgccggagcatttgagtttgcc
ctgttcggtaaaaattatattgaatttggcaaatacatgattaaagatttatatctgttt
atcaatgctatagttcaggagagaggggcagattataaatttaagaaacaagaaaacaca
aatccggacattcctaaagaactggaattaaagattcaaaaaatagaaatattctcggac
attaaagacaaattaatcaatacgttgaccctgacaatccgacttcagcaactgaccgaa
gatttcgcaattgaactaaatgaattaactttgcagaacaaagggaatgtaaacttgtat
attcaggtggtagatgaactttcgccgaataaagtaatgctcttttcgcgtcatcatcgc
atacagataaacaccaaagtatatcatgctctgaaacgcgctcagcaagaagaaatactt
gaatttcaggttcattaa
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