Paludibacter propionicigenes: Palpr_1860
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Entry
Palpr_1860 CDS
T01362
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Palpr_1860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppn03019
]
Palpr_1860
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_1860
Enzymes [BR:
ppn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Palpr_1860
Messenger RNA biogenesis [BR:
ppn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Palpr_1860
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Palpr_1860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ADQ79999
UniProt:
E4T5K5
LinkDB
All DBs
Position
complement(2241739..2243931)
Genome browser
AA seq
730 aa
AA seq
DB search
MAKLSALTTQLKKNFGFDNFKGNQEAIIQNVLDGKDTFVLMPTGGGKSLCYQLPSLLMEG
TAIVISPLIALMKNQVDAMRNFSEEDGIAHFINSSLTKQAIDQVKNDILSGKTKLLYVAP
ESLTKEENIEFLKQLKISFYAVDEAHCISEWGHDFRPEYRRIRPIINDIGAAPLIALTAT
ATPKVQHDIQKNLGMLNATVFKSSFNRANLYYEVRPKTNNVDKDIIKYIRSQAGKSGIIY
CLSRKKVEELSETLRMNGISVLPYHAGMDSAVRSQNQDSFLMEKAEVIVATIAFGMGIDK
PDVRYVLHYDMPKSLEGYYQETGRGGRDGGEGQCIAFYAYKDLDKLRKFMQGKPVAEQEI
GNQLLLETQAYAESSVCRRKLLLHYFGEEYMEENCGCCDNCMKPRKFIEGQELLSLVLET
ILLVKEKFKAEHIVDILKGNETSDVKSYQHNDLDNFSSASDEDERLLHAVIRQAMIAGFI
SKDIENYGLLKLTASGKAYLKKPQPFPIVKDNEFDDEEEETNVGGKNSGGTCAADDVLFS
ILKDLRKKLSKKLEVPPFVIFQDPSLEAMATSYPITMDELQNIPGVGAGKAKRYGEEFLK
VIKEHVKENEIIRPEDLRVRTVANKSKLKVSIIQAIDRKIALDDIALSKGLEISELLDEI
EAIVYSGTKINIDYFLNEVMDPDHIDEIFDYFSSAETDKIDAALDDLGEDDYSETEVRLV
RIKFLSEIGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggccaaattatctgcattaactacgcagttgaaaaagaacttcgggttcgataatttt
aaaggaaatcaggaggcaattattcaaaatgtacttgatggtaaggacacctttgtatta
atgccaaccggtggagggaagtcattgtgttatcaacttccgtcgttattgatggaagga
actgctattgttatttctccgcttattgccttgatgaagaatcaggtggatgcaatgcga
aatttcagtgaagaagatggtattgcgcactttatcaattcatcgttgacaaaacaagct
attgatcaggtaaaaaatgatattttatcgggcaagaccaaattattgtatgtagctcct
gaatcgctcacgaaagaagaaaatattgagtttctaaaacaacttaaaatctctttctat
gctgtagacgaagctcactgtatctctgaatggggacacgatttccgtcctgaatacaga
cgcattcgtccgataataaatgacattggtgctgcaccgcttattgcccttacggcaaca
gcaactccgaaagtgcaacacgatattcagaagaatctgggtatgcttaacgctacggtt
ttcaaatcgtcgttcaatcgtgccaatttatattacgaggttcgtccgaagacgaacaat
gtggataaagatattatcaaatatattcgttcacaagccggtaagtcgggcataatttac
tgcctgagccgtaagaaagtggaagaattatcagaaacactccgcatgaatgggatttct
gtgcttccttatcatgccggaatggactctgccgtaagaagccagaatcaggacagtttc
ctgatggagaaggcagaagtaattgtagccacaattgcttttggaatgggtattgataaa
cccgatgtacgctatgtgttgcattacgatatgcctaaaagcctggaaggttactatcag
gaaacgggacgtggcggtcgtgatgggggcgaaggccaatgcatagcattttatgcttat
aaagatttagacaaactacgcaaatttatgcaaggtaagcccgttgccgagcaagaaatt
ggcaatcaattattattggaaacacaagcctatgctgaatcctccgtttgtcgacggaaa
ttgttgcttcactattttggagaagaatatatggaggaaaactgcggatgctgtgataac
tgtatgaaaccacggaaatttattgaaggacaagaattattgtcgctcgtattggaaact
attttattagtaaaagaaaaattcaaagcagaacatattgttgatattttgaaaggaaat
gaaacatccgatgtaaaatcttatcaacacaatgacctagataattttagttcggcatcg
gatgaagatgagcgattgttgcatgcagtcattcgtcaggctatgattgccggatttata
tcgaaggatattgaaaattacggactcctgaagctcaccgccagtggtaaagcctatttg
aaaaaacctcagccattcccgattgttaaggataacgagtttgatgatgaggaagaagaa
accaatgtaggcgggaaaaacagtggtggaacttgtgctgccgatgacgttctgttttct
attttgaaagatctgagaaagaaactttcgaagaaactggaagttcctccgtttgtgatt
tttcaggatccttcacttgaagcgatggcaaccagctatcctattaccatggacgaattg
caaaacattccgggtgtaggtgcaggtaaggctaagcgttatggagaggaatttctgaaa
gtgataaaagagcacgtaaaggaaaacgagattattcgtcccgaggatttgcgcgttcgt
acagttgccaataaatctaaattgaaagtgtctattattcaggctatcgaccgtaaaata
gcccttgatgatattgcactttccaaaggattggaaatttcagaattactagacgaaatt
gaagctatcgtatattccggtacaaaaatcaacatcgattatttcctgaatgaagttatg
gatcccgatcatattgatgaaatttttgattatttcagttcggccgaaacagataaaata
gatgctgctttggatgaccttggagaagacgattacagcgaaacggaagttcgtttagtt
cgtatcaagtttctttctgaaattggaaactaa
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