Paludibacter propionicigenes: Palpr_2680
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Entry
Palpr_2680 CDS
T01362
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Palpr_2680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppn03019
]
Palpr_2680
Messenger RNA biogenesis [BR:
ppn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Palpr_2680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Cas3_HD
DsrD
Motif
Other DBs
NCBI-ProteinID:
ADQ80810
UniProt:
E4T7W6
LinkDB
All DBs
Position
complement(3219478..3220998)
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AA seq
506 aa
AA seq
DB search
MENIIIGLIALIAGAGGTFVLFRFINKRAIQEAAAEAELLKKNKLIEAKEKFIALKVEHE
QQVQERNAKIQAVEVRLQQKEMQLNQKQGDVQRKINEVEAQKEHFELQLGTIENKKKELE
HLQHQAQAELEAISGLSADQAKERLIEALKEEAKTEAMSYVNDIMEEAKMTANKEAKKII
VQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIIVDDTPEAIV
LSAFDPVRREIARLSLHQLVTDGRIHPARIEEVVNKVRKQVEEEIVEIGKRTTIDLGIHG
LHPELIRMVGKMKYRSSYGQNLLQHARETANLCATMASELGLNPKKAKRAGLLHDIGKVP
DDEPELPHAILGMRLCEKYKEKPDICNAVGAHHDEVEMETLIAPIVQVCDAISGARPGAR
REIVEAYIKRLNDLENLALSYPGVLKTYAIQAGRELRVIVGADKIDDKETELLSFDIAKK
IQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacataataatcggattgattgctttaattgccggagccggcgggacatttgtc
ctgtttcgctttatcaataaacgagcaattcaggaagcagcagcagaggctgaactgctc
aagaaaaataaacttatagaagctaaagaaaaattcatagcgctaaaagtagaacacgaa
cagcaagttcaggagcgaaatgccaaaattcaggctgtagaagtaagacttcaacaaaaa
gaaatgcaactgaaccaaaagcaaggcgatgttcaacggaaaataaatgaagttgaagct
caaaaagaacactttgagttacaacttggaactatagaaaacaagaaaaaagagctggaa
caccttcaacaccaagcacaagctgaacttgaagctatctccggtttatctgccgatcaa
gccaaagaacgattgattgaggcattgaaagaagaagctaaaaccgaagccatgtcgtat
gtaaacgacatcatggaagaagctaaaatgacagccaacaaagaagctaagaaaatcatt
gttcaaagtattcagcgcgtagctaccgaaacggctatagaaaactcggttaccgtattc
cacattgaatctgatgaaataaaaggacgcattattggtcgtgaaggacgtaacatccgc
gccttggaagctgccacaggtgttgaaatcattgttgatgatacccccgaagctattgta
ctttctgcctttgatcctgttcgtcgcgagattgcacgattatcacttcaccagttagta
accgatggacgcattcaccctgcccgtatcgaagaagtagtaaacaaagtgcgtaagcag
gtggaagaagaaatagtggagataggaaaacgtactactatcgatctgggaatccacggg
ttgcaccctgaattgattcgtatggttggtaaaatgaaataccgctcatcgtacggacag
aatttactgcaacatgctcgtgaaacagccaatctttgtgccactatggcttctgaacta
ggcttaaatcctaaaaaggctaaaagagcaggacttttacacgatattggtaaagtgccg
gatgatgaaccggaattgccacacgcaatacttggtatgcgcttgtgtgaaaaatacaaa
gaaaaaccggacatttgtaacgcagtaggtgcgcaccacgacgaagtggaaatggaaacg
cttattgcaccgatagttcaggtgtgtgatgctatctcaggagcgcgtccgggagcacgt
cgagaaatcgtagaagcctatatcaaacgtctgaatgatttggaaaatctggcattgtct
tatcctggcgttttgaaaacctatgctattcaggcaggtcgcgaattgcgcgtgattgtg
ggtgctgacaagattgacgataaagaaaccgaattattgtcgttcgacatagcaaagaaa
atacaagacgaaatgacttatccgggtcaggtaaaaatcacggtgatccgtgaaacccgt
gcagtaagttacgcaaaatag
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