Paludibacter propionicigenes: Palpr_3000
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Entry
Palpr_3000 CDS
T01362
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppn
Paludibacter propionicigenes
Pathway
ppn03030
DNA replication
ppn03430
Mismatch repair
ppn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Palpr_3000
03430 Mismatch repair
Palpr_3000
03440 Homologous recombination
Palpr_3000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppn03032
]
Palpr_3000
03400 DNA repair and recombination proteins [BR:
ppn03400
]
Palpr_3000
Enzymes [BR:
ppn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Palpr_3000
DNA replication proteins [BR:
ppn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Palpr_3000
DNA repair and recombination proteins [BR:
ppn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Palpr_3000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ADQ81128
UniProt:
E4T8L9
LinkDB
All DBs
Position
3614719..3615288
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AA seq
189 aa
AA seq
DB search
MYLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPT
EASRIHGITTERANQEGKPIQTVLRDFQSMINEAQYLVAHNMSFDEKIVGAEFLRNNMPD
SIAPKRKICTMQSTTNFCAINGPYGYKWPKLSELHYKLFKTDFEEAHNAAADIHATARCF
WELRRLGKI
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgtatttattttttgatactgagacaacgggattacctcgggactggaaagctccggtt
agtgacttgaataattggccacgattggttcagttagcctatttattctttgatagcaat
ggaaataaaattgctggaggtgactttattattaaaccggaaggctttactataccaact
gaagcatcccgaattcacggaattacaacagaaagagctaaccaagaaggtaaaccaatt
caaacagttttgagagactttcaatctatgattaatgaggctcaatatcttgttgcgcac
aatatgagctttgacgagaaaattgttggagctgaattcttgaggaataatatgcctgat
agcatagctcctaaaagaaaaatatgtacaatgcaaagtacgactaatttttgtgctatt
aatggtccgtatggatacaaatggcctaaattatcagaattgcattacaaacttttcaaa
acagattttgaagaagcacataatgccgcagcagatatccatgccactgcaaggtgcttt
tgggaattgagaagactagggaagatataa
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