Pandoraea pnomenusa DSM 16536: LV28_01310
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Entry
LV28_01310 CDS
T03411
Name
(GenBank) ligand-gated channel
KO
K02014
iron complex outermembrane recepter protein
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppnm02000
]
LV28_01310
Transporters [BR:
ppnm02000
]
Other transporters
Pores ion channels [TC:
1
]
LV28_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
Motif
Other DBs
NCBI-ProteinID:
AIU25382
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All DBs
Position
2887289..2889460
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AA seq
723 aa
AA seq
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MPCEPSSVTRAVTGVFPARAAGVIWAASLTLAAGNAMAQQAPATADAAQGTAALPATSVS
AGRDDDVRVERVSSGALGTRRAVDTPFSVVAVNSEQIKNQMAQTATDAFKWDPAVSTLSE
NKRNENAYFAVRGMRVDMLDGTKVDGQNFVSWQADIPLEPFEQVELLKGLSGFMYGFGAP
GGIVNYVLKRPTDEPLRQFSVGYEASNVWSQKLDLGGRFGPDNRFGYRLNLVNEEGNTAE
PNNHVRRKTISFATDFRITRDLTWSADVAYWKRQTTGTLFGLNFAGAGAVPDASKVARNL
AQPFSYYETDALTAGTAIDYRINDRWKANFKYRFARQNRLNGDSFLSVLNAAGDYADTQY
KWKTAYYYQAWDGMLQGKFDTGPLRHDVVFGVSYQSQVKLNDNGLGGNGIALGTSNIYNP
SLLPNQDIGLDYEPYRSEKISQRAIFASDTVGITPRISALVGLRYTQFNDDLYNIAGQTS
TSYRAKPVTPTLALMYKTDSDSTAYASYVESLEPGGSAGVTDNNYPQTFGPLKSKQYEVG
WKADKQRWGANLALFRVERGYAYTNQANDFVQDGTQRFQGLDASGWVRVARDWRVLGGVL
LLNTKAVGVDDPSVAGKRIFATPKYVVTGRVEYDTPFVRGLTLAAGVKVTGQQEVDAANT
LSIPAYTTMDVSAKYATRIAGKSVVLRAAVNNLTDKHYWTTTYNGFVLPGSTRTVLASAT
MDF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
ctgccttgcgaaccgtcatcggtcacacgcgctgtgaccggcgtattccccgcgcgggcg
gctggcgtcatttgggccgcatcgctcaccctggccgctggcaatgcgatggcgcagcag
gcaccggccacggctgacgcggcgcaaggcaccgccgccctgcctgctaccagcgtgtcg
gctgggcgcgatgacgatgtgcgcgtcgagcgggtttcgagcggcgcgctgggcacgcgc
cgcgcggtggacacgccgttctccgtggtcgcggtcaacagcgagcagatcaagaaccag
atggcgcagaccgccacggacgccttcaagtgggaccccgcggtgagcaccctgtcggag
aacaagcgcaacgaaaacgcgtatttcgcggtgcgcggcatgcgcgtcgacatgctcgac
gggaccaaggtcgacggtcagaattttgtgtcgtggcaggccgacattccgctcgaaccg
ttcgagcaggtcgagctgctcaagggcctgtcgggattcatgtatggcttcggtgcgccg
ggcggcatcgtcaactatgtgctcaagcgcccgacggacgaaccgctgcgccagttctcc
gtcggctacgaagccagcaacgtctggagccagaagctcgatctgggcggacgcttcggc
ccggacaaccgtttcggctatcgcctgaatctcgtgaacgaagaaggcaacacggccgaa
cccaacaaccacgtgcgccgcaagacgatctcgttcgcgacggacttccgcattacccgc
gatctcacctggtcggcggacgtggcgtactggaagcgccagacgaccggcaccctgttc
ggcctgaacttcgcgggcgccggcgcggtgcccgatgccagcaaggtcgcgcgcaatctt
gcccagcccttctcgtattacgagaccgatgccctcaccgcgggcaccgcgatcgactat
cgcatcaacgatcggtggaaggcgaacttcaagtaccgctttgcccggcagaaccgcctg
aacggcgacagcttcctttcggtgctcaatgccgcgggcgactatgcggatacgcagtac
aagtggaagacggcctattactaccaggcctgggacggcatgctgcaaggcaagttcgac
accggcccgctcaggcacgacgtggtgttcggggtctcgtaccaaagccaggtcaagctc
aacgacaacggtctgggcggcaatggcatcgcccttggcacgagcaacatctacaatccg
tcgctgcttcccaaccaggacatcggactcgattacgaaccgtatcgcagcgagaagatt
tcgcagcgcgcgatcttcgcgagcgacacggtgggcatcacgccgcgcatctccgccctg
gtcgggctgcgttatacgcagttcaatgacgatctgtacaacattgccgggcagacgagc
acctcttatcgcgcgaagccggtcacgcccacgctcgcattgatgtacaagacggactcg
gattccacggcttatgcgagctacgtcgagtcgctcgaaccgggcggctcggcaggcgtc
accgacaataactatccgcagacgtttggcccgctcaagagcaagcagtacgaggtaggc
tggaaagcagacaagcagcgctggggcgcgaatctcgcgctgttccgcgtggagcgcggc
tatgcttacacgaaccaggcgaacgacttcgtgcaggacggtacgcaacgcttccagggg
ctcgatgcgagtggctgggtacgcgttgcgcgcgactggcgggttctgggcggcgtactg
ctgctcaacacgaaggccgtgggcgttgacgatccgagcgtggcgggcaagcgcatcttc
gccacgccgaagtatgtggtgaccggtcgcgtcgaatacgacacgccgttcgtgcgcggc
ctgaccctggccgcgggcgtgaaggtcaccggccagcaggaagtcgatgccgccaacacg
ctgtcgattccggcctacaccaccatggatgtgtcggcgaagtacgccacgcgcatcgcc
ggcaagtcggtcgtgttgcgcgccgccgtcaacaacctgacggacaagcactactggacg
acgacctacaacggctttgtgctgccgggttcgacccgcaccgtcctcgccagcgccacg
atggacttctga
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