Pandoraea pnomenusa DSM 16536: LV28_03795
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Entry
LV28_03795 CDS
T03411
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LV28_03795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_03795
Enzymes [BR:
ppnm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LV28_03795
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LV28_03795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
AAA_30
Cas3-like_C_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIU25778
UniProt:
A0A378YDH8
LinkDB
All DBs
Position
complement(2324813..2328277)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSANAPARTTAPVPLVKAGQRYAFAGSHASSDALLIARYFEDNRERLPLLAVVCAQATD
ALRLQQELKWCAPELRVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFFFMQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LFPMGSALPYRLDLFDDTVDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEPTRTAFRGR
WREVFEGDPSRSPIYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPADAQLVFVGDLDAA
ITRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTLAKPFARLTLPTPGDGTWATAL
PPLAINRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDHDLRPVSVESLEDF
LTSDARFAIGVAPLAAGFLLPTEDLAFITENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGDSKLYVPVSQLHLISRYSGA
DPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFQLSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTTKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDMLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLTAPLAATTEINLHVPAILPSD
FCGDVQERLSLYKRLANGTQPDAIDTIQEELVDRFGKLPQQAQALIETHRLRLLAKPLGI
LKIDASEEAIALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEVKHAQLTDRVRAIK
ETLRALGSPSARAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgccaacgccccagcccgtactaccgcgcccgtgccgctcgtgaaagcggga
cagcgttacgccttcgccggatcgcacgcctcgagcgatgccctgctcatcgcccgctat
ttcgaggacaaccgcgaacgcctgccgctgctggcggtggtctgcgctcaggccaccgac
gccctgcgtctgcagcaggaactcaaatggtgcgcgcccgaactgcgcgtacgtctgctg
cccgattgggagacgctgccgtacgacacgttctcgccgcaccaggatctggtttccgag
cgcctcgccacgctgcacgatctcggggaaaagcgttgcgacatcgtgctcgtgccggcg
actacggcgctctatcgcatggccccggcgagcttcatggcggcctatacgttcttcttc
atgcagggcgagcgactcgacgaagcgcggctgaagtcgcaactcacgctcgcgggatac
gagcacgtgagtcaggtgatgcgcccgggcgaatactgcgtgcgcggtggcctgatcgac
ctcttcccgatgggctccgcactcccctaccgtctcgacctgttcgacgacaccgtcgac
agcattcgcgccttcgatcccgacacgcagcgcagcctgtatcccgtcaaggaagtccgc
ttgcttcccgggcgcgagtttccgttcgacgagccgacgcgcaccgcgtttcggggtcgc
tggcgcgaggtgttcgagggcgatccgagccgcagtccgatctacaaggacatcggcagc
ggcgtgccttccgcgggcatcgagtactacctgccgctgttcttcgaagaaacggccacc
ctctttcactatctgccggccgacgcgcagctcgtgttcgtgggcgacctcgacgcggcg
attacccgcttctggaacgacacgcgccagcgctacaacttcctgtcgcacgatcgcgag
cggccggtactgccgcccgagcaactgttcctgctcgatcaggacttcttcacgctcgcc
aagcccttcgcacgcctgaccctgcccacaccgggcgacggcacctgggccacggcgctg
ccgccgctggcgatcaaccggcgcgccgacgacccgctcgccgcgctgcgcgcctacctc
gctcgcacgcctgcgcgcgtgctgctgtgcgccgactcggccggacgccgggagacgctg
ctgcaactgctgcacgaccacgatctgcgtcccgtttcggtcgaatcgctcgaagatttc
ctgacgtcggacgcccgcttcgccatcggcgtcgccccgctcgccgccggcttcctgttg
ccgaccgaggacctcgcgttcatcaccgagaacgagctttacgaaggtctcgcgcgccgc
gccggcaagcgccgtcaggaacaggcgacgtccgtcgactccatggtgcgcgatctggcc
gaactcaaggtcggcgacccggtggtgcatagccagcatggcatcgggcgctaccagggc
ctcgtgagcatggacctcggcgaaggagagaccgagttcctgcatctcgagtattcgggc
gacagcaagctgtacgtgcccgtctcgcagctgcatctgatatcgcgctacagcggcgcc
gatccggacacggcaccgttgcactcgctcggctcggggcagtgggaaaaggcaaagcgc
aaggcggcacagcagattcgcgacaccgcggcagaactgctcaacctgtatgcccgtcgc
gcggcgcgctcgggctacgccttccagctctcgccgcgcgactacgagaaattcgccgac
agtttcggcttcgaggaaacgccggaccaggccgcggccatcgctgccgtgatgagcgac
atgacgagcggccgcccaatggatcgcctggtgtgcggcgacgtgggcttcggcaagacc
gaggtggccttgcgcgcggcattcatcgccgtgctcgacggcaagcaggtcgccctgctc
gcgccgaccacgctgcttgccgagcagcatgcgcagacgttctccgaccgctttgccgac
tggcccgtgcgcatcgcggaactctcgcgcttcaagacgacaaaggaagtcaacgccagc
gtaaaggcgatcaacgaaggccaggtcgatatcgtgatcggcacgcacaagctgctctcg
aacgacattcagttccagcgactggggctggtcatcatcgatgaggaacaccggttcggc
gtgcgccagaaggaagcgctcaaggcgctgcgcgccgaggtcgacatgctcaccctcacc
gccacgccgatcccgcgcacgctgggcatggcgctcgagggactgcgcgacttctccgtc
atcgccacggcgccgcagaagcggctcgcgatcaagacgttcgtccgacgagaggaagat
ggcgtcattcgcgaagccatgctgcgcgagctcaaacgcggcgggcaggtgtacttcctg
cacaacgaggtggagacgatcgaaaatcgcaaggcgcagctcgaagccctcgtgccggaa
gcgcgcatcgtcgtcgcgcatggccagatgcacgagcgcgatctcgagcgcgtcatgcgc
gacttcgtgacgcaacgcgccaacgtgctgctgtgcacgaccatcatcgagaccggcatc
gacgtgccgaccgccaacacgatcctgatgcatcgcgccgacaaattcggcctcgcgcag
ctgcaccagcttcgcggacgtgtcggacgctcgcatcaccaggcctacgcctatctgctc
gtgcacgatccgaagtcgctcacgaagcaggcccagcgacgtctcgaagcgattcagcaa
atggaagagctgggtgcgggcttctacctcgccatgcacgacctggaaattcgcggcgcg
ggcgaagtgctcggcgacaagcagtccggcgagattcacgagatcggcttccaactctac
acggacatgctggccgacgccgtgagcgcgttgaaggcaggacgcgaacccgacctcacc
gcgccgctggccgccaccaccgagatcaacctgcacgtgccggccattctaccgagcgac
ttctgcggcgacgtgcaggagcgcctttcgctctacaagcggctggccaacggtacgcag
cccgacgccatcgacaccatccaggaagagctcgtcgaccgcttcggcaagctgccgcag
caggcccaggcgctcatcgagacgcaccgccttcggctgctggccaaaccgctcggcatc
ctcaagatcgatgcgagcgaggaagccatcgcgctgcaattcgagcccacgcccgccgtc
gatccgatgcgcatcatcgagctggtgcagaagcatcgccacatcaagctcgctggccag
gacaagctgcgcatcgaggtcaagcacgcgcaactgaccgatcgcgtgcgtgccatcaag
gagacgttgcgtgcgctcggatcacccagcgcgagagcggcctga
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