Pandoraea pnomenusa DSM 16536: LV28_05420
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Entry
LV28_05420 CDS
T03411
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_05420
Enzymes [BR:
ppnm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
LV28_05420
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
LV28_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AIU26057
UniProt:
A0A378YFB0
LinkDB
All DBs
Position
1966043..1967596
Genome browser
AA seq
517 aa
AA seq
DB search
MHADTEPPTHTLRLVLGDQLHPGHRWFSRVDPAVVYVLMEVRQETDYVLHHAQKIIAIFA
AMRDFARHLRAGGHRVRYVALDHPSNRQSITENLAALADHYGARRVEWQQPDEWRLDAQL
NSWGMSQPLDWAVVDSEHFLTPRDALASLMGERKQWLMEHFYRNMRRRWHLLLDADGGPQ
GGRWNFDSDNRKRWPGTPPEPTDWRPRHDHRALWQMLQRAGVRSFGDPQADAMRWPVNRT
EALACLEAFITQALPHFGDYEDALAAGAPRLFHSLLSFALNVKMLHPLEVVRRAEAAYAA
GRAPLAAVEGFVRQIAGWREYVRGIYWAKMPDYASHNALNHETPLPDWFWSGNTRMRCLH
LAITQSLQTAHAHHIQRLMVIGNFALLARLDPQALHRWYLGVYIDAFEWVELPNTLGMSQ
RADGGLIATKPYVSSAAYLRRMGDYCQGCAYDPMQKTGARACPFNALYWDFFDHHAPTLQ
DNPRLAIVFRQWQKMDDAQREALRAHAAKLRERLDTL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcatgccgataccgaaccaccgactcataccctgcgcctggtgctgggagaccaattg
cacccgggccatcgctggttttcgcgggtggacccagcggtcgtctacgtattgatggaa
gtgcggcaggaaaccgactacgtgctgcaccatgcccagaagatcatcgccatattcgcc
gcgatgcgtgactttgcccggcacctgcgcgccggagggcaccgtgtgcgctacgtggca
ctggaccatccgagcaatcgtcaatccatcacggaaaatctggcggcactcgccgatcac
tacggcgcccgccgggtcgagtggcaacagccggacgaatggcgactggacgcgcaactc
aacagttgggggatgtctcagcccctggactgggcggtggtggacagcgaacatttcctg
acgccgcgtgacgcgcttgcctcgctcatgggcgagcgcaagcagtggttgatggagcac
ttctaccggaacatgcgccggcgctggcatttgctgctcgatgccgacggcggcccgcaa
ggcggtcgatggaatttcgactcggacaaccgcaagcgctggccgggaacgccgccagag
ccgacggactggcgcccgcgacacgatcaccgggcgctgtggcaaatgctgcagcgcgca
ggcgtgcgcagcttcggcgatccgcaggccgacgcgatgcgctggccggtcaaccgcacg
gaggcgctggcctgccttgaggctttcatcacacaggcgctgccgcacttcggcgactac
gaggatgcattggccgccggcgcgccacgcctgttccattcgcttctgtcgttcgcgctc
aacgtcaagatgctgcatcccctggaagtggtgcggcgtgcggaggctgcctacgctgcg
ggccgggcgccgcttgccgcggtggaaggcttcgttcggcagatcgcggggtggcgagaa
tacgtgcgcggcatttactgggcgaagatgcccgactacgcgtcgcacaacgccctgaat
cacgagacccccttgccggactggttctggagcggcaacacccgcatgcgctgtctgcac
ctggccatcacgcagtccctgcaaaccgcgcatgcgcaccatatccaacggctcatggtg
atcggcaatttcgccttgctggcccgactcgacccgcaggcgctgcatcgctggtatctg
ggcgtgtacatcgacgcattcgagtgggtggagctgccgaacacacttggcatgagccag
cgcgccgatggcggactgattgccacgaaaccctatgtgagcagtgctgcctacctgcgg
cgaatgggcgattactgccagggctgtgcttacgatcccatgcaaaaaaccggtgcgcgc
gcctgcccgttcaacgcgctttactgggatttctttgaccaccatgcgcccacgctgcag
gacaacccgcgccttgcgatcgttttccgccagtggcaaaagatggacgacgcgcagcgc
gaggcgctacgtgcgcatgccgcgaagttgcgcgagcgactggacaccttgtaa
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