Pandoraea pnomenusa DSM 16536: LV28_07935
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Entry
LV28_07935 CDS
T03411
Name
(GenBank) ethanolamine utilization protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03030
DNA replication
ppnm03430
Mismatch repair
ppnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV28_07935
03430 Mismatch repair
LV28_07935
03440 Homologous recombination
LV28_07935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppnm03032
]
LV28_07935
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_07935
Enzymes [BR:
ppnm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV28_07935
DNA replication proteins [BR:
ppnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV28_07935
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV28_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DNA_pol_A_exo1
DUF7508
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ALR35820
UniProt:
A0A378YJT0
LinkDB
All DBs
Position
complement(1405460..1407307)
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AA seq
615 aa
AA seq
DB search
MQDFAVDEANDSFREAPDPDALARSLPAAMVFVDLETTGGNALEDRITEIGVVEVGPHGI
EQWSTLLDPAEPIPPFIQQLTGITNEMVRGQPSFATLAQGLAERLHGKLFVAHNARFDYG
FLKNEFKRAGIAFQADVLCTVRLSRLLFPSAARHGLDALIARFGLTPMGRHRALADAELL
WQFWQKLHTIYAPELIEQAVQRVTKRSSQPPQLPDEAIDALPSRPGVYLFYGEGDTLLYV
GKSVDIRARVRSHFSSDHQVAKDLRISQEIRRVEARPTVGELGALLLESQLVKQLQPVHN
RMLRRASSLYSWQFPPDTDTPRLVSAKTVDFADAQALFGTFSSRTRAESALRALADEHRL
CCAQLGLEKIAPGRPCFGYQVKRCDGVCVGEASLEAHNERVREALATLQLETWPYDGPIA
IEEHGPGEHAAETAYHVIDRWQYLGSVTSADALDGLLERMPAVTGFDPDIYRLLGRRLAA
SATGHFAGKPGSVDNRRARSGRPVGTTGGVSGGAAVEGAVEGAVESMIERAAGSAAASAG
TGNEDAGRNGEARAPATRKPLAPLVVLRLIRPTFRLSPDDPPEAVAPKPRSMALQRRRQP
CPEDPAQLRLPFDAH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagatttcgcggtcgacgaggctaacgattccttccgcgaggcgccggatccggat
gcgctggcgcgctcgctgcccgcagcgatggtcttcgtcgatctcgagacaacgggcggc
aatgcgctggaggatcgcatcacggagatcggcgtcgtcgaagtcggcccgcatggaatc
gagcagtggagcaccctgctcgatccggccgagccaattccgcccttcatccagcaactc
acgggtatcaccaacgaaatggtgcgtggccagccgtctttcgccacgttggcgcagggg
ctcgccgaacgccttcacggcaagctgttcgtcgcgcacaacgcccgcttcgattacggt
tttctcaagaacgaattcaagcgcgcaggcattgcatttcaggccgacgtcctttgcacg
gtgcgcttgtctcgccttctgttcccttcggccgcccgtcacgggctcgatgccctcatc
gcccgattcggcctcacaccgatgggtcgccaccgcgcacttgccgacgccgaactgctc
tggcagttctggcagaagctccacacgatctacgcccccgagctgatcgagcaggccgtc
cagcgcgtcacgaagcgatcgagccaacctccccagttgccggacgaagccatcgacgcg
ctgccgagccgccctggcgtgtatctcttctacggcgaaggcgatacgcttctctacgtc
ggcaagagcgtcgacattcgcgcgcgggtacgctcgcatttctccagcgatcaccaggtc
gcgaaagacctgcggatctcgcaggagatccgtcgcgtggaagcccggccgacagtgggg
gaactgggggcattgctgctcgaatcgcagctcgtcaagcagttgcaaccggtgcacaac
cgcatgcttcgtcgcgcatccagcctctacagctggcaattcccgcccgacaccgatacg
ccgcgactggtgagcgcgaagaccgtcgacttcgccgatgcccaggcgttgttcggtacg
ttttcatctcgcactcgcgcggagagcgcccttcgtgcactggccgacgagcaccgcctt
tgctgcgcgcaactcggactcgagaagatcgcgcccggacgcccctgcttcggctatcag
gtcaagcgatgcgatggcgtctgcgtgggcgaggcgtcgcttgaggcgcacaacgagcgc
gtccgcgaggcgctcgccacgctgcaactggaaacgtggccgtacgacggccccatcgcc
atcgaagagcatggccccggcgaacacgcggccgagacggcctatcacgtcatcgaccgt
tggcagtatctgggcagcgtgacatccgccgacgccctcgacggtctgctcgaacgcatg
ccggccgtgaccggcttcgaccccgacatctaccggctgctcggcagacgtcttgccgct
tcggcgacgggtcacttcgccgggaagcccgggagtgtcgacaatcgccgcgcacgcagc
gggcgaccggtcggaacgaccgggggtgtctcgggaggcgctgctgttgagggcgccgtt
gagggcgcggttgagagcatgattgagcgcgcggcaggaagcgcggcggcgagcgcgggc
acgggaaatgaagatgccggccgaaacggcgaagcacgcgcaccggcgacgcgcaaaccg
ctcgcgccgctggttgtcctgcgcctcatccggccgacctttcggctgagtccggacgat
ccccccgaagccgtcgcgccaaaaccacgcagtatggcgttgcagcgtcgccgccagccg
tgtccggaagatccggcacaactgcgccttcccttcgacgcacactga
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