Pandoraea pnomenusa DSM 16536: LV28_08525
Help
Entry
LV28_08525 CDS
T03411
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03030
DNA replication
ppnm03430
Mismatch repair
ppnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV28_08525 (dnaE)
03430 Mismatch repair
LV28_08525 (dnaE)
03440 Homologous recombination
LV28_08525 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppnm03032
]
LV28_08525 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_08525 (dnaE)
Enzymes [BR:
ppnm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV28_08525 (dnaE)
DNA replication proteins [BR:
ppnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV28_08525 (dnaE)
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV28_08525 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AIU26580
UniProt:
A0A378YIH7
LinkDB
All DBs
Position
1277076..1280663
Genome browser
AA seq
1195 aa
AA seq
DB search
MSPMSEPRFVHLRLHSEYSIADGIVRLDDVVKAAAKDGQGALALTDLANMFGAIRFYKGA
RGKGVKPIIGCDAWITNPADRDKPSRLLLLARDREGYLNLCQLLSRAWLGNQWRGRAEID
ASWLQPDGLARGLLALSGAQMGDVGMALAAGNPELALQCARHWADVFPGAFYIELQRTGQ
PGMEAYVQQAVQLAARAGLPVVATHPIQFMTADDFTAHEARVCISEGEMLGNARRVRRFT
QDQSFRTQDDMIAAFEDVPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQ
LSKEGLEKRLELLFPDEAERDKQRPDYYKRLEFETGTIIKMGFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQDGRDRV
IQYVKEKYGADAVSQIATFGSMAAKAAVRDVGRVLDLGYNFVDGISKLIPFKPGKHVTID
DALKEEPQLAERYQTEDEVKQLIELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQG
GGEDASGVVSQYDKDDVEAVGLVKFDFLGLTTLTILNWAERYIKRLHPEMKDWSLDQVSL
TDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLQETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAE
EMAEHREIFAKGAAANGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYEDCLANGLGVLPPDVNVSAYRFEPADAKTVRYGLGAI
KGSGQSAIEEILRAREGKPFTDLFDFCARIDRRVVNRRTIEALIRAGAFDTIHENRAQLM
ASVPMAMEAAEQASAAANQVSLFDLGDESLQAPLELADEPAWTDKRKLQEEKQALGFYLS
GHMFDSYVEEVRRFVRTRIRDLTDGRDKLVAGVISSMRTMMTQRGKMLIVQLDDGTSTLE
VTIFNEQFEANKHLFKEDELLIVQGNARPDSFTGGLRFTTESVMDLGRARARFARALKLS
FNGNADWTRLRATLQPHCTMYRVAATAGAGGGGGGFNGGGGFNGGGGGGFGRRNGSGNGD
GDGEKQNGLPVHIVYRRPDAECESRLGDDWKVQPGDELLGELRQWLTTDSVQIIY
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagaacctcgcttcgtccacctccgcctccattccgaatactcgatc
gccgatggcatcgtgcggctcgatgatgtcgtcaaggccgccgccaaggacggtcagggc
gcgcttgcgctcaccgacctcgcgaacatgttcggcgccattcgtttctacaagggagcc
cgcggcaagggcgtcaagccgatcatcggctgcgatgcctggatcacgaacccggccgac
cgcgacaagccctcgcggctgctgctgcttgcgcgcgaccgtgaaggctacctgaacctc
tgccagttgctttcccgggcatggctgggcaaccagtggcgcgggcgggcggaaattgac
gcgtcgtggttgcagcccgacggtctggcgcgcggtctgctggcgttgtcaggcgcgcag
atgggcgacgtcggcatggcgctggcggcgggcaatccggaattggcgctgcaatgcgcc
aggcattgggccgacgtattcccgggcgcgttctatatcgagttgcagcgcacgggccag
ccgggcatggaggcgtacgtgcagcaggccgtgcagctcgcggccagggccgggttgccg
gtcgtggccacgcacccgatccagttcatgacggccgacgatttcacggcgcacgaagcg
cgcgtgtgtatttcggaaggcgagatgctcggcaatgcgcgccgagtacggcgcttcacg
caggaccagagtttccgcacgcaggacgacatgatcgccgcgttcgaagacgtgccgtcg
gcgatcgccaacaccgtcgagatcgccaagcgctgcaacctcacgctcgaactgggcaag
ccgaagctgccgctgttcccgacgcccgacggcatgtcgctcgacgactacctcgtacag
ttgtccaaggaggggctggagaagcgtctcgagctgcttttccccgacgaggccgagcgc
gacaagcagcgtcccgattactacaagcggctcgaattcgagacgggcaccatcatcaag
atgggctttcccggctacttcctgatcgtggccgacttcattcagtgggcgaagaacaac
ggcgtgccggtggggccgggtcgcggctccggcgcgggctcgctcgttgcctacgcgctc
ggcattaccgacctcgacccgctcaaatacaacctgctgttcgagcgcttcctcaacccg
gaacgcgtgtcgatgcccgacttcgacatcgacttctgccaggatgggcgcgaccgggtc
attcagtacgtgaaagagaagtacggcgccgacgccgtttcgcagatcgccaccttcggc
tcgatggcagccaaggccgcggtacgcgacgtgggtcgcgtgctcgatctgggctacaac
ttcgttgacggcatctccaagctgatcccgttcaagcccggcaagcacgtcaccatcgac
gacgcgctcaaggaagagccgcaactggccgagcgctatcagacggaagatgaagtcaag
caactgatcgagctggcgcagcgtgtcgaggggctgacgcgaaacgtcggcatgcacgcg
ggcggtgtgctgatcgccccgggcaagctgaccgacttctgcccgctctacacgcagggc
ggcggcgaagacgccagtggggtcgtgagtcagtacgacaaggacgacgtggaagcggtc
ggcctcgtgaagttcgactttctgggactgaccacgctcacgatcctgaactgggcggag
cgctacatcaagcgattgcatccggaaatgaaggactggtcgctcgatcaggtctcgctc
accgacccggcggcgttcagcattctgaaaaaagccaatacggtggcggtgttccagctg
gaaagccggggcatgcagggcatgttgaaggatgcccagcccgaccgcttcgaagacatc
atcgcgctcgtggcgttgtaccgtccgggcccgatggacctgattccgagcttctgtgcg
cgaaagcatggccgggaaaaggtggaatacccggatccgcgcgtcgagccggtgctccag
gagacctacggcatcatggtctatcaggagcaggtgatgcagatggcgcagatcatcggc
ggttactcgctcggcggcgccgacttgctgcgtcgtgcgatgggcaagaagaaggccgag
gagatggccgagcaccgcgagatcttcgccaagggggccgccgccaacggcctcacgcgt
gaaaagtcggacgaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaag
tcgcacgccgccgcctacgcgctgctggcgtattacaccgcatggctcaaggcacaccat
cctgccgaattcatggccgccaacatgagcttggccatggacgacacggacaaggtcaag
attctctacgaggactgcctggcgaacggtctcggtgtgttgccccccgacgtgaacgtc
tcggcctaccgcttcgagccggccgacgcgaaaaccgtgcgctacggtctgggcgccatc
aagggcagtggtcagtcggccatcgaggaaatcctgcgggcacgcgaaggcaagccgttt
accgatctgttcgatttttgcgcgcgcatcgaccgtcgcgtcgtgaaccgtcgcaccatc
gaagcgttgattcgcgccggggcgttcgacacgattcacgaaaaccgggcccagttgatg
gcatcggtgccgatggcgatggaggccgcggagcaggcgagcgccgcggccaatcaggtc
agcctgttcgatctcggcgacgagagccttcaggcgccgctggagttggccgacgagccg
gcctggaccgacaagcgcaagctgcaggaagaaaagcaggcactcggcttctatctgtcg
gggcacatgttcgactcctacgtggaggaagtgcggcgtttcgtgcgcacgcggattcgc
gacctcacggacggccgcgacaagctggtcgccggcgtgatctccagcatgcgcacgatg
atgacccagcgcggcaagatgctgatcgtgcagctcgatgacggcacgtccacgctcgaa
gtcacgatcttcaatgagcagttcgaggccaacaagcatttgttcaaggaagacgagttg
ctgatcgtccagggcaatgcgcggccggacagcttcacgggcgggctgcgtttcaccacc
gaaagcgtgatggacctcggccgtgcgcgtgcacgttttgcgcgggcgctcaagttgtcg
ttcaacggcaatgccgactggacgcgcctgcgcgccaccctccagccgcattgcacgatg
tatcgcgtggccgcgacggccggggcgggcggtggtggtggcggcttcaatggtggcggc
gggttcaacggcggtggcggtggtggctttggccggcgcaacggtagcggcaacggcgat
ggtgacggcgaaaagcagaacggcctgccggtgcacatcgtgtatcgccgcccggacgcc
gaatgcgagtcgaggctgggcgacgactggaaggtgcagccgggcgacgagttgctcggc
gaacttcgccagtggctcacgaccgactcggtgcagatcatctactga
DBGET
integrated database retrieval system
