Pandoraea pnomenusa DSM 16536: LV28_08600
Help
Entry
LV28_08600 CDS
T03411
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LV28_08600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_08600
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LV28_08600
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LV28_08600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
SH3_13
SLFN-g3_helicase
AAA_22
RecD_N
Herpes_Helicase
DEAD
nSTAND3
DUF4350
PhoH
CbiA
AAA_25
UvrD_C
T2SSE
TraI_hel_assoc_N
MukB
AAA_16
Flavi_DEAD
AAA_28
KTI12
Motif
Other DBs
NCBI-ProteinID:
ALR35811
UniProt:
A0A378YKP3
LinkDB
All DBs
Position
1258039..1260237
Genome browser
AA seq
732 aa
AA seq
DB search
MNELRRTADTPSGAQADSGVVRLAQGFARRMALLAKGNGADEVTCRYVWRASLAVSLATA
EGHVCVPLGDLLDTQASGELFPGDAPSLAVWREALFASGLCARASLAHALTNHAPTGAST
GASTIDAPAEAFPLLLDERDRLYLARYYGYEARLATALGRKLSTGQRMAVTSEDRARLRR
YFGEGVLTGADGQPEPNWQMAAAALALQRSLVVLSGGPGTGKTTTVVGLLACLLERDADL
RVALAAPTGKAAQRMQEALTARQDLPETVRQALPEAALTLHRLLGVLPESADQVGRRFRH
HAGNPLPYDLIVVDEASMIDLSMATQLLEAVPEGARLILLGDKDQLAAVEAGAVFGELSA
QRAFSPQMRSRLLDALGWPRDRPPLTGPLAGPGAHGQGGVDATADDAEAANTQHTQRARG
LEDAVVWLERTYRFGAHSAIGRLATAIKAGKVIEARKECVAPDTVQMAEVVDMTEMAGAD
RVTLTEDGGIQLSPTNLHALADGYSAYLDALTQAFETIDRLGDPAAASASDVAMVAQPVF
AAFGQFRVLCATRGARRGVEFLGAQLTAVLARRAGVALGAGGGAWFAGRPVLVTQNEYAL
NLFNGDIGIALPLGPSGTLRVAFATPDGGYRLYSPASLPAHETAFAMTIHKSQGSEFDRV
AIVLPEQASRVLSRELIYTGVTRARRQAALYAPWPVIASAIARPTQRDGGLTDRLREVLA
TMPASPPQSRLP
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgcgtcgcaccgccgacacgccgtcgggggcgcaagccgacagcggtgtc
gtgcgtctcgcgcaaggtttcgcacgccgcatggccctgctcgccaagggcaacggcgcc
gacgaggtgacgtgccgctatgtctggcgtgcctcgcttgccgtaagcctcgcgactgcg
gaaggtcatgtgtgcgtgcccctcggcgacctgctcgacacccaggccagcggcgagttg
tttcctggcgacgccccttcgctggccgtctggcgagaggcccttttcgccagtggtctg
tgcgcgcgggcaagccttgcgcatgcattgacgaaccatgcgcccacaggcgcgtcgact
ggcgcgtcgacgatcgatgcgccggccgaggcgtttccgctgttgctcgacgagcgcgat
cgtctctatctggcgcgctattacggctacgaggcgcgtctggcgacggcgctcgggcgc
aagctctcgacggggcagcgcatggccgtcacctccgaggaccgcgctcgcttgcgacga
tacttcggcgagggggtgctgacgggggcggacggacaaccggaaccgaactggcagatg
gcggctgccgcgctggcgctccaacgctcgttggtggtgctcagcggcggccccggcacc
ggcaagaccacgacagtggtcggtttgctagcctgcctgctggagcgcgacgccgatctg
cgcgtcgcgctggcggcgcccacgggcaaggccgcgcaacgcatgcaggaggcgctcacc
gcgcgccaggatctgcccgagaccgtgcggcaggcgctgcccgaggcggcactcaccctg
caccgtctgctcggcgtgcttcccgagtccgcggatcaggtcggacgtcgcttccggcat
catgcgggcaatccgctgccctacgatctgatcgtggtggacgaggcatcgatgatcgac
ttgtcgatggcgacgcaactgctggaagccgtgccggagggcgcccgtctgattctcctg
ggcgacaaggaccagttggcggccgtggaggccggggcggtcttcggcgaactgagcgcg
cagcgtgcgttttcgccacagatgcgttcgcgtctgctcgacgcgctggggtggccgagg
gatcgtccaccgctcacggggccgttggccgggcctggtgcgcacggtcaaggcggtgtc
gacgcaactgccgatgatgccgaagcggcgaacacgcagcacacgcagcgcgcccgcggg
cttgaagatgcggtggtctggctcgaacgcacctatcggttcggtgcccactcggccatt
ggccgactggctaccgccatcaaggcgggcaaggtcatcgaggcgcgcaaggagtgtgtc
gcgccggacaccgtccagatggcggaagtggtggatatgacggaaatggcgggagcggac
agggtgacgctgaccgaggacggcggcatccagttgtcgccgacgaatcttcatgcgctc
gccgacgggtattcggcttacctcgacgcgctgacgcaggccttcgagacgatcgatcgg
ctcggcgaccctgcggcggcgagtgcgtctgacgtcgccatggtcgcgcagccggttttc
gccgccttcggacaattccgcgtgctgtgcgccacgcgcggtgctcgccgcggcgtcgag
ttcctcggcgcacaactgacggccgtgctggcgcgacgcgcgggcgtcgccctcggcgct
ggcggcggggcatggtttgcagggcgtccggtactggtcacgcagaacgagtacgcgttg
aacctgttcaacggcgacatcggcatagccctgccgctcggtccgtccggtacgctgcgt
gtggcgttcgccacgccggacggcggctaccgactgtactcgccggcaagcctgcccgca
cacgagaccgcgttcgcgatgacgattcacaagtcgcaaggctcggagttcgatcgcgtc
gcgatcgtcctgcccgagcaggcgagccgtgtgctctcgcgggaattgatctacacgggc
gtgacgcgtgcccgccggcaagccgcgctttatgcgccgtggccggtcatcgcatctgcc
atcgcgcggccgacgcagcgcgacggcggcttgaccgaccgcttgcgcgaggtgttggct
acgatgccggcttcgccgccgcaatcgcggcttccgtga
DBGET
integrated database retrieval system
