Pandoraea pnomenusa DSM 16536: LV28_08610
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Entry
LV28_08610 CDS
T03411
Name
(GenBank) hypothetical protein
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LV28_08610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_08610
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LV28_08610
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LV28_08610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AIU26593
LinkDB
All DBs
Position
1250742..1254158
Genome browser
AA seq
1138 aa
AA seq
DB search
MLHLFFSNRFTTLEAALLRDLAQAPGQGDAAANPFDTETIVVPSVAVRRRLELDYADIFG
VCANVRLTYLAQWLWDMAGKLLTVPESSPFAPDRLVWPLYQCLAQPWVRSSPRLAGYLAG
ADDVMRFELAERLAHIYDQYLTYRPNWLERWQAGEPIDAGTAPGWGQVQRDDEAWQSALW
RKVLAHLDIRERHPTLRAIDRIEQLTPETVPHGWPRRVSVFALSSMPPLSMALLKAMSRL
IDVHLYVLNPCESYWFDIVPPSRLSYLTRRDGAAHREVGHPLLAEWGRQTQSHIDALYAD
LAPQAVEDRALFQPNPAPTLLAALQNGILTLDDGRHGTTQEVGADGSVQVHVCHSLARQI
EVLHDRLLACFDEIPDLRPDDVLITVPDLGRAAPLIDAVFGTATPRIPYLVTGLPPTRTN
PVARAFASILALPQQRVAASSLVELARTEAVAQRYDLGGNVLDAIQNWLHAAGARRGWRG
DALLRLEAPRQAADGDGEMAPALERHTLGDAMMRLFLGYALPDDALPVDDWLPVGGIEGG
RAELLGQLARLIDDLDMTSVALRTERTGLEWRDQLLAMLEQFFSDETRFADDVAEVRMAI
EQIGSAIADGAPEVRVPVEVVARVLADALDDPTRGGVPSGRVTFAAIPSLRLLPYRVVCM
IGMDDGVLPGRVRADEFDLMRVLPQRGDRQRRDDERNLFLDLMLSAQDRFLITYTGRSVR
DNAPLPPSTAVDELLDFTGQLLAPVSAGYTLEAQREARDALIVLHPLQPFSPAYFDGRDA
SLFSYDVSNGDAARALADPLAVPASDVPEAPFVREALPAVAQTHLTLDDLLRFWRHPGRA
WARDRLGLSLGEMLTEVEDDEPFVLDWAGRDALASRLLPRLLRDDARDARHHAEAVERIA
RVSHELPGGATGAVWRRRELGGLRALAAQVREAQAEGTQELLVALPLTPALPPSWKASTP
AAWHGDATLSAQCLLQGRLAPVSRYGLVMYRYGSMRPSDLLAAWLAHLALCAHLQQSAHA
GLDVAPRTLWYGENETFALRPVEDAAALLAQWVALYRLGQTRPLPFFARSAWKLASTGRA
AEAESAWQGSAFARGDADDPYTRLLWRGVENPLAPPFDLLANTVFGPVVQHLEVVEGA
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgctccacctattcttttccaaccggttcaccacgctcgaagccgccttgctgcgcgat
ctcgcgcaagcgcccggccagggcgacgccgccgcgaatcccttcgacacggaaaccatc
gtcgtgccgagcgtggcggtgcggcgtcggctcgaactggactacgcggacatcttcggc
gtatgcgcgaacgtccggctgacctacctcgcccagtggctctgggacatggcgggcaag
ctgctcacggtgccggagagttcgccgttcgcgccggaccggctcgtctggccgctgtac
cagtgcctggcccagccgtgggtcaggagctcgccgcgtttggccggctatctggccggc
gccgacgatgtcatgcgcttcgaactggcggagcgtctggcgcacatctatgaccagtat
ctgacctatcggccgaactggctcgagcgttggcaggccggcgagcccatcgatgccggc
acggcgccgggctgggggcaggtgcagcgtgacgacgaagcgtggcagagcgcgttgtgg
cgaaaggtgctggcgcatctggacatccgcgagcgtcatcccacgctccgggcgatcgac
cggatcgaacaactgacaccggaaacggtgccccatggctggcccaggcgtgtgtcggtg
ttcgcactgtcgtcgatgccgccgttgtcgatggcgctgctcaaggcgatgtctcgcctg
atcgacgtccatctgtacgtcctcaatccgtgcgagagctattggttcgacatcgtcccg
ccgtcgcgtctgtcgtatctcacgcgccgcgatggcgcggcgcaccgggaggtggggcat
ccgttgctggccgagtggggtcgccagacgcagtcccacatcgacgcgctgtatgccgat
ctcgcgccacaggcggtcgaagaccgggcgctattccaacccaatcctgccccgacgctg
ctcgccgccttgcagaacggcatcctcacgctggacgacggccgtcacggcaccacgcag
gaggtcggcgccgatggttcggtgcaggtgcatgtgtgccacagtctggcgcgccagatc
gaggtgcttcacgaccggctgcttgcctgcttcgacgaaattcccgatctgcggcccgac
gacgtgctgatcaccgtgcccgatctgggacgcgcggcgccgctcatcgacgccgtattc
gggaccgccacgcctcgcattccctatctcgtgacgggcctgccgcccacgcgcaccaat
ccggtcgcgcgcgccttcgcttccatactggcattgccgcagcagcgggtggcggcatcg
agtctcgtggaactggcgcgcacggaagccgtggcgcaacgctatgacctcgggggcaat
gtgctcgatgccatccagaactggctgcacgccgccggcgcacgtcgcggctggcgcggc
gacgcgctgctgcggctggaggcaccgcggcaggccgcagacggcgacggggagatggcg
cccgcgctggagcgtcatacgttgggagacgccatgatgcggctgttcctcggctatgcg
ctgccggatgacgctttgccggtcgacgactggctgccggtcggcggtatcgagggcggt
cgtgccgagttgcttggccagctggcgcgtctgatcgacgatctcgacatgacgtccgtt
gcgctgcggacggagcgcacggggcttgagtggcgcgatcagttgctcgcgatgctggag
cagttcttctccgacgagacgcgcttcgccgacgacgtggccgaggtgcgcatggcaatc
gagcagatcggttcggccattgccgacggcgcaccggaggttcgcgtgccggttgaagtg
gtcgcccgcgtgctggccgacgccctcgacgatcccacgcgcggcggcgtgccctcgggg
cgcgtgacgtttgccgccatcccgagcctgcgtctcttgccgtaccgcgtggtgtgcatg
atcggcatggacgacggtgtgcttccggggcgcgtacgtgccgacgagttcgacctgatg
cgcgtgttgccgcagcgaggcgatcgtcaacgacgcgacgacgagcgcaacctcttcctc
gacctgatgctcagcgcccaggatcgctttctcatcacctataccgggcgcagcgtgcgc
gacaacgcacctctgccgccctcgaccgcggtcgacgaactgctcgatttcacgggacag
ttgcttgccccggtatccgcggggtacacgctcgaggcacagcgcgaggcgcgcgacgcc
ctgatcgtgctgcatccgttgcaaccgttttccccggcttatttcgacggtcgcgacgcg
tcgctcttcagctacgacgtgtccaacggcgacgccgcgcgggcgttggccgaccccctg
gccgtgcccgcatcagacgtccccgaggcgcccttcgtgcgagaagcgctgcccgccgtg
gcgcagacgcatctgacgctcgacgacctgctccgcttctggcggcatcccggccgtgcg
tgggcaagggaccgactgggactgtcgctgggggagatgctcaccgaagtggaggacgat
gagccgttcgtgctggattgggcgggccgcgatgcgctggcgtccaggctgctgccgcga
ttgctgcgcgacgatgcacgcgacgcccgccatcatgccgaagccgtcgagcgaatcgcc
cgcgtgagtcatgagttgccgggcggcgcgacaggcgcggtctggcgccggcgcgagctg
ggtggcttgcgcgcgctcgcggcgcaggtgcgcgaggcccaggccgaagggacgcaggag
ctattggtggccctgccgttgacgccggcactgccgccgtcgtggaaggcatcgacgccg
gccgcatggcacggtgacgcgaccttgtcggcgcagtgtctgttgcaaggacggctcgca
ccggtttcgcgttacgggctggtgatgtatcgctatggcagcatgcgtccaagcgatctg
ctcgccgcgtggctggcgcatcttgccttgtgtgcgcatttgcagcagagcgcgcatgcc
ggtctggatgtggcgccaagaacgttgtggtacggcgagaacgagacgttcgcccttcgt
cccgtggaagacgcggcggcgttgctcgcccaatgggtggcgttgtaccggctgggccag
acgcgcccgctaccgtttttcgcacgcagcgcgtggaagctggcgagcaccggcagggcc
gcagaggccgagagcgcctggcagggttcggcgttcgcacgcggtgatgccgacgatcct
tacacgcggctactttggcgcggcgtggagaatcccttggcgccgcccttcgatctgctt
gcgaataccgtgttcgggccggtggttcaacatctcgaagtcgtggagggcgcatga
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