Pandoraea pnomenusa DSM 16536: LV28_09015
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Entry
LV28_09015 CDS
T03411
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LV28_09015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_09015
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
LV28_09015
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LV28_09015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
CorA
DUF4515
HIP1_clath_bdg
Motif
Other DBs
NCBI-ProteinID:
AIU26665
UniProt:
A0A378YKQ8
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All DBs
Position
1163087..1164460
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AA seq
457 aa
AA seq
DB search
MNPSFDDARPTGGADRVLSVSDLNKAVAGVLERSFPLAWVSGEISNFTRAASGHWYFSIK
DAQAQMRCVMFRGRAQHADFMPKEGDRVEVRALLSMYVPRGEVQLNVEAIRRAGQGNLYE
AFLRLKEKLAAAGLFDTARKRVLPKYARRVGVVTSLQAAALRDVLTTLARRAPHVAVVVY
PAPVQGADAAARLAAALDIANARREVDTILLCRGGGSIEDLWAFNEEVLAHAIARSELPV
VSGVGHETDFTIADFVADVRAPTPTAAAELISAARDECLREVDRERQRLTRAMWRTLEQR
AQQLDSLSRGLVSPRERLARQRGELAHLSDRMRHALERPLAQRRGRFEMLRLRLARAVPD
IASQHERVALLGQRMQSAMSRRAERTSQRLTDARAQLELLNPRRTLQRGYAAVLDARGQP
LRDPRRLQRGQQVTMHLAQGAADVGIGDVQVRLDDTF
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatctttcgacgacgcccggcccaccggtggtgcggatcgcgtgctaagtgtt
tcagatctgaacaaagccgtggccggcgtgctcgagcggagcttccctctggcctgggtc
agcggcgagatctcgaacttcacgcgcgcggccagcggtcattggtatttttccatcaag
gacgcccaggcgcagatgcgctgcgtgatgttccgcggacgcgcgcagcatgccgatttc
atgccgaaagagggcgatcgcgtcgaagttcgcgccttgctctcgatgtatgtgccacgc
ggcgaagtgcaactcaacgtggaggctatccgtcgcgccggacagggcaacctgtacgag
gcgttcctgcggctcaaggaaaagctcgccgcggcagggctcttcgataccgcccgaaaa
cgtgtgttgccaaagtacgcacgtcgcgttggcgtcgtgacgtcgttgcaagccgccgcg
ctgcgcgacgtactgaccacgctggcgcggcgtgcgccacacgtcgcggtcgtggtctat
cccgccccggtgcagggcgccgacgccgcggcccgcctcgccgccgcgctcgacatcgcc
aacgcccgtcgcgaggtggataccatcctgctgtgccgcggcggcggctcgatcgaagac
ctctgggctttcaacgaggaagtgctggcgcacgcgattgcgcgaagcgaactgccggtc
gtctcgggcgtggggcacgaaaccgatttcaccattgcggacttcgtggccgatgtgcgg
gcgcccacgccgacggcggccgccgaactcatcagtgccgcgcgcgacgaatgcctgcgc
gaggtcgaccgcgagcgccagcgtcttacgcgcgccatgtggcgtacgctcgagcagcgc
gcccagcaactcgacagcctgtcgcgcgggttggtgtcgccgcgcgaacgtctggcgcgt
cagcgcggcgagctcgcgcacttgtccgatcgcatgcggcacgcactggagcgcccgttg
gcgcaacgtcggggccgcttcgagatgttgcgcctgcggctggcgcgcgccgtgccggat
attgcgtcgcaacatgaacgcgtggcattgcttggacagcgcatgcagagtgccatgtcg
cgccgcgccgagcgcacatcgcagcgtctgaccgatgccagggcccagcttgaactgctc
aatccgcgtcgaacgctgcagcgcggttatgccgcggtgctcgatgccagggggcaaccg
ctgcgcgacccccgtcggctgcaacgcggccagcaggtcacgatgcatttggcgcaaggc
gcggccgatgtcggcattggtgacgttcaagtcaggctagacgatactttttag
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