Pandoraea pnomenusa DSM 16536: LV28_11170
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Entry
LV28_11170 CDS
T03411
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppnm03016
]
LV28_11170
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LV28_11170
Transfer RNA biogenesis [BR:
ppnm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LV28_11170
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Collagen
Motif
Other DBs
NCBI-ProteinID:
AIU27013
UniProt:
A0A378YL59
LinkDB
All DBs
Position
713500..715671
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AA seq
723 aa
AA seq
DB search
MNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFETPTPAELIAQAQAA
AQDIDMSFLWECAPAEEFPFPTLAAEYFGEGASVAQQAGLALALQASPIYFRRKGRGQYQ
RAPQEQLQAALAGLARKQQQAELQAGYADQLIAGTLPDALRGKELVLLFRPDKNAIEWKA
LDAAAIALGKTHAEVMLACGGIASPRAYHEAAFLYEYFPRGTGFPDVGPVPLPADDLPLA
EVQAFSIDDSTTTEIDDALSVQMLPDGLLRVGIHIAAPALGLSRGDPIDEIARVRLSTVY
APGEKITMLPDAVVEAYTLAEGGARPALSLYVVVKADTYEIVATETRAERVPISANLRHN
ELDSIITAETLADGSGDYPHKDELRLLWPFAQSLYDKRQAARVGYGLRPEVQNKTDFNFY
VDGEHVTIKQRLRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRAYGVNRTRMQT
SPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLIACVRHGVTAKLAAPFKPKDADLYATVS
SFEAAYAAYGEHQSRMERYWCLRWLIQENKSQVQASVLKGDTVRLNDIPLTLIVPGLGLH
ARGTQIMLDVLSLDVVTLSISVRVSQVLDASQALLGDDDDEGDGGEGEGGEGSDGNAGSD
GADGDDGADGADGADGTDGDDSPADADGSGDRTDAGATSTDASPLAAALMAAGARDASAS
TAC
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaacattttttttgaggaatccggcggcttcaaggctggcacggtgttgtcgcagcag
ggcgagtcgtaccaggttgagctgcccggcgggcgccgaagcaagatcaaggggcgcgac
gttctgttgcgcttcgagacgcccacccccgccgaactgatcgcgcaagcgcaggccgca
gcacaggacatcgacatgagtttcctgtgggagtgcgcgcctgccgaagaatttccgttc
ccgacgctcgccgccgaatatttcggagaaggggcgagcgttgcccagcaggcgggactg
gcgctggccctgcaggcgtcgccgatctacttccgtcgcaaggggcgcggacaatatcag
cgcgcgccgcaggagcagctgcaggccgcgctcgccgggctggcgcgcaagcaacagcag
gccgaactgcaggcggggtacgccgatcaactgatcgccggtacgctaccggacgcgctc
aggggcaaggagctggtgctgctgttccgtccggacaagaacgccatcgagtggaaggcg
ctcgacgcggcggcgattgccctgggcaagacgcacgccgaggtgatgctggcatgcggc
ggcattgcgtcgccgcgcgcttaccacgaggcggcgttcctctacgaatacttcccgcgc
ggcaccggcttccccgacgtgggacccgttcccctgccggccgacgacctgccgctggcc
gaggtgcaggcattctcgatcgacgattcgacgaccaccgagatcgacgacgcgctctcg
gtgcagatgctgcccgatggcctgctgcgcgtgggtatccatattgcggcaccggcgctg
gggctctcacgcggcgatcccatcgacgaaatcgcgcgcgtgcgcctgtcgacggtctat
gcgcccggcgagaagatcacgatgctgcccgatgccgtggtcgaggcttacacgctcgcc
gagggtggcgctcgcccggcgctctcgctttacgtcgtggtcaaggcggacacctacgag
atcgtggcgaccgagacccgggccgagcgggtgccgatctcggcgaacctgcgccacaac
gagctcgattcgatcatcacggccgaaacgctggccgacggcagcggcgactatccgcac
aaggacgagcttcgcctgctgtggccgttcgcgcagtcgctctacgacaagcgccaggcg
gcgcgcgtgggctatggcctgcgcccggaagtacagaacaagaccgacttcaacttttat
gtcgacggcgagcacgtcacgatcaagcagcgcctgcgcggcgcaccgctcgatctgatc
gtcgccgagatggcgattctcgcgaacagccgctggggacgcctgctggcggaatgcggt
gtgcccggcatctaccgtgcacaacgtgcctacggcgtgaatcgcacgcgcatgcagacc
tcgcccgcaccgcacgaggggcttggcgtggagcaatacgcgtggagcacgtcgccgctg
cgccgctacgtcgatctggtgaaccagtggcaactgatcgcctgcgtgcgtcatggtgtg
accgccaagctggcggccccgttcaagccgaaggacgccgacctctatgccacggtgtcg
agcttcgaggccgcctatgcggcgtacggtgagcaccagagccgcatggaacgctactgg
tgcctgcgctggttgatccaggagaacaagtctcaggtgcaggcgagcgtgctcaagggc
gataccgttcgtctgaacgacatcccgctcacgctgatcgtgccgggcctgggattgcac
gcgcgcggcacgcagatcatgctcgacgtgctctcgctcgatgtcgtcaccctcagcatc
tcggtgcgtgtctcgcaagtgctcgacgccagccaggcgttgctcggagacgacgatgac
gagggcgacggtggcgaaggcgaggggggtgagggcagtgacggcaatgcgggtagcgac
ggcgccgatggtgacgatggtgccgacggtgccgatggcgccgacggtacagatggcgac
gatagtcccgcagacgccgacggctcgggcgatcgtactgatgccggcgccacgtccacc
gacgcctccccgctcgccgccgcactgatggccgcgggcgcgcgcgacgcatccgccagc
acggcgtgctga
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