Pandoraea pnomenusa DSM 16536: LV28_11680
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Entry
LV28_11680 CDS
T03411
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LV28_11680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_11680
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LV28_11680
DNA repair and recombination proteins [BR:
ppnm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LV28_11680
Prokaryotic type
LV28_11680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AIU27103
LinkDB
All DBs
Position
complement(600529..601281)
Genome browser
AA seq
250 aa
AA seq
DB search
MAQDSHPEAAGPLKGRIEDQFDALPRDWKTLVAPFVQSDAYASLCRFVDAEVAAGKTVYP
ADIFHALRMTSPGDVKVVILGQDPYHGDDHGIAQAHGMAFSVQRGVRVPPSLRNMYKEIE
RDLGIVPPSHGNLDAWAKQGVLLLNTTLTVEAGHAASHAKPFKTGGWQACTDTLLSGLAT
QPEPLVFMLWGSHAQAKAPLLAGHDHLLLEAPHPSPLSAHRGFLGCGHFSAANAFLEQHG
KTPIDWRLPA
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaagacagccatcccgaggccgccgggccactgaaggggcgcatcgaggaccag
ttcgacgccctgccgcgcgactggaagacgctggtcgcgccgttcgtgcaaagcgacgcc
tatgcttccctgtgccggttcgtggatgcggaagtcgcggcgggcaagaccgtgtatccc
gccgacatctttcacgcgttgcgcatgacgtcgcccggcgacgtgaaggtcgtgatcctg
ggtcaggacccgtatcacggcgacgatcacggcattgcccaggcgcacggcatggcgttt
tccgtgcaacgcggcgtgcgcgtgccgccgtcgctgcgcaacatgtacaaggaaatcgag
cgggatctcggcatcgtgcccccatcgcacggcaatctcgacgcgtgggcgaaacaaggc
gtgctgctgctcaacacgaccctcacggtggaagcgggccatgcggccagccacgcgaag
ccgttcaagaccggcggctggcaggcgtgcaccgacacactgctgagcggactcgccacg
caaccggagccgctcgtcttcatgctctggggcagtcacgcgcaggccaaggcgccgctg
ctcgccggacacgaccacctgctgctggaagcaccgcacccgtccccgctttcggcgcac
cggggctttctcggctgcggccatttcagcgccgccaacgccttcctcgaacaacacggc
aagacgcccatcgactggcgcctgcctgcctga
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integrated database retrieval system
