Pandoraea pnomenusa DSM 16536: LV28_11960
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Entry
LV28_11960 CDS
T03411
Name
(GenBank) Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppnm03000
]
LV28_11960
Transcription factors [BR:
ppnm03000
]
Prokaryotic type
Helix-turn-helix
Other families
LV28_11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
HTH_30
AAA_5
HTH_50
HTH_23
PAS_4
PAS_8
PAS_9
HTH_22
HTH_29
HTH_7
HTH_1
AAA_16
RWP-RK
HTH_28
HTH_17
HTH_20
Diguanyl_cycl_sensor
AAA_2
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
AIU27149
UniProt:
A0A378YLS4
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Position
535248..537173
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AA seq
641 aa
AA seq
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MPVNTESAHARRVLSVAQGRPAPGAAETDPNIASSWRRCLDAHALDPGARMAPRVLASSE
LRERRSAMEQLRSVSMPVLERLQRQLMNPHQAVLLSAPDGVIVDSRLQDGTRDDFHRAGL
WPGADWSESCEGTNGIGTCAVERTPVIICQQDHFRALHTPLTCTASPVFAPHGDLLAVID
VSSTRADLTRQSQFHTLALVNLSAKVVESEYFFQHYRDEWLLQLQEQADHLGGFAQALVA
FDDAGRVLAVNQSALNRLGTTREGIVGTRVDRWFAQPLDALFAQAHPTPGACWPIRTHTG
EALLAMVRAPLRSVRAPRASPGTATTLHGERVKPFADATLAQAFSRACRVFAHDVPVLIR
GETGSGKEVFARAVHAASARASGPFVALNCAAIPESLIESELFGYVGGSFTGARKEGMNG
KLWQANGGTLFLDEIGDMPFAMQTRLLRVLEERMVSPLGGGEPVALDIRVLSATHRDLSE
RIAAREFREDLFYRLSGLEVSVPPLREREDKRDLIFQLLSQTDAHGRIALTDEAQERLCA
YAWPGNVRQMRSVIRTLVALNEQDVITVDDLPQALREARGSMPTGAGPEVPTEAPLEAAE
RQALRATLDACQGQVSAAARKLGVSRNTLYRKLRRFGLLRG
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcaataccgagtcggcacacgcgcgccgtgtgctgagcgttgcccaagggcgc
ccggcgccgggcgccgccgagaccgacccgaatatcgccagctcgtggcgccgctgcctc
gacgcgcatgcgctcgacccgggcgcgcgcatggcaccgcgcgtgctcgcgtcgtcggag
ctgcgcgagcgacgcagcgcgatggagcagttgcgttccgtgtcgatgccggtgctcgaa
cgcttgcaacgacagttgatgaatccgcaccaggccgtgttgctgagcgcgcccgacggc
gtcatcgtcgattcgcggctccaagacggcacgcgcgacgacttccatcgcgccggtctg
tggcccggcgcggactggagcgaatcgtgcgaaggcaccaacggcatcggcacgtgcgcg
gtcgagcgcacccccgtcatcatctgccagcaggatcatttccgggcgttgcatacgccg
cttacctgcacggcaagtcccgtcttcgcgccacacggcgatctgctcgcggtgatcgat
gtgtcttcgacgcgcgccgacctcacgcgccagagccagtttcacacgcttgccctcgtc
aacctgtccgccaaggttgtggagagcgagtatttcttccagcactatcgcgacgaatgg
ctcctgcaactccaggagcaggccgatcatctcggcggtttcgcgcaggcgctggtcgcg
ttcgacgacgccgggcgggtgctcgccgtcaaccagagcgcgctgaaccggctcggcacg
acgcgcgagggcatcgtcggcacacgcgtggaccggtggttcgcgcagccgctcgacgcg
ctgttcgcgcaggcgcatccgacgcccggcgcctgctggcccattcggacacataccggg
gaagcgctgctcgcgatggtgcgcgcgccgctgcgctcggtgcgtgcgccacgcgcgtca
cccggtacggcgacgacgctgcacggcgagcgcgtcaagccattcgctgatgccacgctc
gcacaggcgttctcgcgcgcctgccgcgttttcgcccacgacgtccccgtgctcatccgt
ggcgagaccgggagcggcaaggaagtgttcgcgcgcgcggtgcacgccgccagtgcgcgg
gccagcggcccgttcgtggcattgaactgcgcggccatccccgaatcgctgatcgagagt
gagttgttcggctatgtcggcggcagcttcaccggcgcgcgcaaggaagggatgaacggc
aagctgtggcaggccaacggcggtacgttgtttctcgacgagatcggcgacatgccgttt
gcgatgcaaacacgcctgctgcgtgtgctggaggagcgcatggtgtcgccgcttgggggc
ggcgagcccgtggcgctcgacattcgcgtgctcagcgcgacgcatcgtgacctgtccgag
cggattgccgcgcgggagtttcgcgaggacctgttctatcgtctgagcggtctcgaggtc
agcgtaccgccgctgcgagagcgcgaagacaagcgtgacctgatcttccagctactctcg
caaacggacgcgcacggccgcatcgcgctcacggacgaagcgcaggagcgcctgtgcgcc
tatgcgtggccgggcaacgtgcgtcagatgcgcagcgtcattcgcacgctcgtcgcgctc
aacgagcaggatgtgatcacggtggatgacctgccgcaggcgttgcgcgaagcgcgcggc
tcgatgccgaccggcgccgggccggaggtgccgacggaggcgccgctggaagccgcggag
cgtcaggcgctgcgcgccacgctcgacgcctgccagggtcaggtcagcgccgcggcgcgc
aagctcggcgtgagccgcaacacgctgtaccgcaagctccggcgcttcggcctgttgcgg
gggtaa
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