Pandoraea pnomenusa DSM 16536: LV28_23860
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Entry
LV28_23860 CDS
T03411
Name
(GenBank) adenosine deaminase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LV28_23860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppnm03000
]
LV28_23860
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_23860
Enzymes [BR:
ppnm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LV28_23860
Transcription factors [BR:
ppnm03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LV28_23860
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LV28_23860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AIU29210
UniProt:
A0A378YZ92
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All DBs
Position
3362043..3363530
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AA seq
495 aa
AA seq
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MTLDPEVCYKAVSARDRRFDGWFFVGVASTGIYCRPVCNVRTPRFENCSFYGSAAAAEKA
GFRPCLKCRPELAPGSARFDATRELADAAAAMIDEGFLNHADLPALAARIGITERHLRRI
FADEFGVSPVEYAQTQRLLLAKRLLTDTALPVTEVAMAAGFGSVRRFNGLFKTRYGFPPG
RLRQNARHAALPDGDLVFQLAYRPPLAWHALLDFLGERAIEGVEVREADTYTRTLDIERQ
DGRIVAGWCRVTPLPDRHALQVTLPPALAGSVPQVLGKLRHLFDLGARPDVIDSHLGKLA
AATPGLRVPGAVDGFEIAMRAIVGQQITVKGARRLLGRLAQRFGTPLPSPVHGLTHTFPS
ATQMLAAPADAIGEAGIIRSRIAAIHGVSRAIVEGRLRLDPLAPLETTVAALLAIKGIGP
WTAQYIAMRALGSPDAMPVDDLVLRQALGVADGRGVAARAARWAPWRAYAALHVWRAAAQ
GPAGQPVGILLEESA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgaccccgaggtctgctacaaggccgtctccgcccgcgaccggcgcttcgac
ggctggttcttcgtcggtgtcgcgtcgaccggtatctattgccgcccggtgtgcaatgtg
cgcacgccccgcttcgagaactgctcgttctacggcagcgccgccgctgcggaaaaggcc
gggttccgcccctgtctcaagtgccggccggaactcgcccccggcagtgcccgcttcgat
gccacgcgcgagctcgccgacgccgcggcggcaatgatcgacgaaggttttctgaatcac
gcggacctgccggcgctcgcggcacgcatcggcatcacggagcgacatctgcgccggatc
tttgcagacgaattcggcgtatcgccggtcgagtacgcgcaaacccagcgcctgctgctc
gccaagcgactgctcaccgacacggcactccccgtgacggaggtcgcgatggccgcaggc
ttcggcagcgtgcgacgcttcaatggcctgttcaagacgcgatacggcttcccgccagga
cgccttcgccagaacgcccgacatgccgccctgcccgacggggatctcgtcttccagctc
gcctatcgcccgccgctcgcgtggcatgccctgctcgatttcctcggcgagcgcgccatc
gaaggtgtggaggtgcgcgaggcggacacatacacgcgaaccctcgacatcgaacgtcag
gacggccggatcgttgcgggctggtgccgcgtgaccccgctgccggatcgccacgccctg
caggtgaccctgccaccggccctggcggggagcgtgccgcaggtgctgggcaagctgcgt
cacctgttcgatctgggcgcacgcccggatgtgatcgattcgcacctgggcaagctggcc
gccgccaccccgggacttcgcgtgcccggcgccgtcgacgggttcgagatcgcaatgcgg
gcgatcgtcgggcagcagatcacggtcaagggcgcgcgccgtctgcttggccgtctggcg
cagcgcttcggcacgccgctgccctcacccgtgcatggcctgacccatacgttcccgagc
gcgacgcagatgcttgcggctcccgcggacgcgattggcgaagccggtatcattcgaagt
cgaattgccgcgattcacggcgtctcgagggcgatcgtggagggccgcctgcgactggac
ccgctcgcaccgctcgagacgaccgtcgccgcgttgctggcgatcaagggcatcggccca
tggacggcgcagtacattgcgatgcgtgccctcggttcgccggacgcgatgccggtggat
gatctggtgctgcgccaggcgctgggcgtggcggacggtcgtggcgtggccgcacgcgcg
gcccgctgggcgccctggcgtgcatacgcggcgctacatgtctggcgcgcggcggcacag
ggaccggcagggcaacctgtcgggattttgctggaggaaagtgcatga
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