Pandoraea pnomenusa DSM 16536: LV28_24165
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Entry
LV28_24165 CDS
T03411
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Pathway
ppnm03030
DNA replication
ppnm03430
Mismatch repair
ppnm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV28_24165
03430 Mismatch repair
LV28_24165
03440 Homologous recombination
LV28_24165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppnm03032
]
LV28_24165
03400 DNA repair and recombination proteins [BR:
ppnm03400
]
LV28_24165
Enzymes [BR:
ppnm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV28_24165
DNA replication proteins [BR:
ppnm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV28_24165
DNA repair and recombination proteins [BR:
ppnm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV28_24165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DNA_pol3_tau_5
RuvB_N
AAA_16
AAA_22
AAA_5
AAA_14
AAA_18
DUF3646
AAA_30
AAA_2
TsaE
nSTAND3
PIF1
AAA_19
AAA_assoc_2
AAA_28
RsgA_GTPase
Mg_chelatase
Herpes_Helicase
Glyco_tranf_2_5
SKI
Rad17
Motif
Other DBs
NCBI-ProteinID:
AIU29262
LinkDB
All DBs
Position
complement(3290529..3292451)
Genome browser
AA seq
640 aa
AA seq
DB search
MTYQVLARKWRPKGFSTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK
ALNCETGITAEPCGVCKACRAIDEGRFVDYVEMDAASNRGVDEMTSLLEKAVYAPADARF
KVYMIDEVHMLTGHAFNAMLKTLEEPPAHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA
GHIVSHLTNILGEEGIESEPQALRLLAKAAGGSMRDALSLTDQAIAYAAGPLSETAVRGM
LGAIDQSVLVRLLDALKDESRTDLLAIADEMAERSFSFAAGLQDLGSLLHKIALAQYAPQ
AVSDDWPEAADVRRLAEALSPEAVQLYYQIATRARGELGLAPDEYTGFSMALLRMAAFTP
LLAGGTLAEPPMPRAAGAARAAAPSTGAPARVPTGEPGRMTSSASSPMGGAGAVAAPAQP
EARRVPAARSTAAPADGAPMSPARAALAALNAGRKGTAGRTSNGGAAAGANRGNPSRASD
DAPAGADPEPEPAPPAPAPAVAPHACVYREADGVAPVFTGDWPALAVELPARGLAQQLAF
QSELTEVAGRALHLRVPLRQLADAATTDKLRQALNEHFGTEVQLHVALGQVGTTAASLAA
EAAAARQRAAEQAIAEDPLVRELIEDFGAQILPGSIRPVQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacctatcaagtactcgcgcgcaaatggcgccccaaaggcttctcgaccctggtgggc
caggagcatgtcgtgcgtgcgttgacgcacgcgctcgagcaacagcgtctgcatcacgcc
tatttgtttacgggcacgcgcggcgtcggcaagacgacgctctcgcgtattttggccaag
gcgctcaactgcgagacggggatcacggccgagccgtgtggtgtgtgcaaggcgtgccgc
gcgatcgacgagggccgtttcgtcgattacgtcgaaatggatgcggcgtcgaaccggggc
gtcgatgaaatgacgtcgttgctcgagaaggccgtctacgcgcccgcggatgcccgcttc
aaggtctacatgatcgacgaagtgcacatgctcacggggcacgcgttcaacgcgatgctc
aagacgctcgaggagccgcccgcacacgtcaagttcatcctggcgacgaccgatccgcaa
aagattccggtcaccgtgctctcgcgttgcctgcaattcaacctgaagcagatgcctgcc
gggcatatcgtgtcgcacctcacgaatatcctgggcgaagagggcatcgagagcgagcca
caggcgctgcgcctgctcgccaaggcggcggggggcagcatgcgcgacgcgctctcgctc
accgatcaggccatcgcctatgcggcggggccgctgtccgagacagcggtacgcggcatg
ctcggcgccatcgaccagagtgtgctcgtgcgcttgctcgatgccctcaaggacgaatcg
cgtaccgacctgctggcgatcgccgatgaaatggccgagcgcagtttctcgtttgccgcc
gggctccaggacctcggcagtctgctgcacaaaattgccctggcgcagtacgcaccccaa
gccgtctccgacgattggccggaagcggcggacgtgcggcgtctggccgaggcgttgtcg
cccgaggccgtgcaactctattaccagatcgccacgcgtgcgcgcggcgaattgggtctc
gcacccgacgaatacaccggtttctccatggcgctgctgcgcatggcggcattcacgccg
ctgctcgcaggcggcacgctggccgaaccacccatgccccgggccgccggtgccgctcgc
gccgcggcgccctcgaccggcgcgccggcacgcgtgccgacgggtgagccgggccgcatg
acgtcgtcggcatcgtcgcctatggggggggcgggcgccgtggcagcacccgcacagccc
gaggcgcgccgcgtgcccgccgcgcgcagtaccgccgcgccggccgacggcgcaccgatg
tcgcccgcccgggcggcgcttgccgcactcaatgccggacgcaagggcacggccgggcgc
accagcaacgggggcgctgccgcaggcgccaaccgaggcaatccgtcgcgcgcctcggac
gatgccccggccggcgccgatcctgaacctgagcctgccccgccggcacctgcaccggcc
gtcgcgccgcacgcctgtgtctatcgcgaagccgacggcgtggcgcccgtgttcacgggc
gattggccggcgctggcggtcgaactgccggcgcgggggcttgcccagcaactggcattc
cagagcgaattgacggaagtcgcggggcgcgcgctgcatttgcgcgtgccgctgcgtcaa
ctggccgacgccgccaccaccgacaagctgcgacaggcgctcaacgagcatttcggcacg
gaagtgcaactgcacgtggcgctgggacaggtcggcacgacggcggcttcgctggcggcc
gaagcggctgccgcaaggcagcgcgccgccgagcaggccattgccgaggatccgctcgtg
cgcgaattgatcgaggatttcggtgcacagatcctgccgggcagcattcgcccggtacaa
taa
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