Pandoraea pnomenusa RB38: DA70_05795
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Entry
DA70_05795 CDS
T03067
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppno
Pandoraea pnomenusa RB38
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppno03019
]
DA70_05795
Enzymes [BR:
ppno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DA70_05795
Messenger RNA biogenesis [BR:
ppno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DA70_05795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_19
AAA_22
NACHT
nSTAND3
T2SSE
AAA_30
AAA_23
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AHN74042
LinkDB
All DBs
Position
2278380..2282615
Genome browser
AA seq
1411 aa
AA seq
DB search
MASDERNRQSQPPKPKVTAPGQTRAQPRDPAQSQTTSDPGGAPANAGHRPGRSRQPDRGG
QAGAAAGNRATKAATGPGTAATAARRPSPAERAARDAERLAARQAAANRVPEIAFPEALP
VSARREEIARAVADHQVVIVSGETGSGKTTQLPKICLALGRGLGAGGTGLIGHTQPRRIA
ASATARRIADELGTPLGEIVGFKVRFNDTLSNGASVKLMTDGILLAETQTDPLLRAYDTI
IIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFARHFGTGEGETLRPAPV
IEVSGRLYPVEVRYRPIQDDARIANAEGRENSRASARDRERDLMDGIVDAVDELCREGAG
DVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSAAEQERVFRPSNARRIVLATNVA
ETSLTVPGIRYVVDAGTARVKRYSYRNKVEQLQIESISQAAANQRAGRCGRVADGVCIRL
YDEADFQSRARFTDPEILRSSLAAVILRMQSLRLSKVEEFPFLEPPPGRAIADGYQLLGE
LGAVDDANQLTPLGRELARLPLDPRVGRMILAARDQQSLREVLIIASGLAVQDPRDRPIE
AQDAADNAHRKFADEKSEFLSWLKIWKWFEEAIAHKKSNRLLTQACRENFLSQLRLREWR
DVHSQLLTVVREQGWRINESEATYEQVHLALLAGLLGNIGCKADDDPHFLGAHGIKFHIW
PGSSLVKKAGRWVMAGELVETSRLYARCIARIEPEWIERVGKHLVKTSLSDAHWEKKAAQ
VTAYERGTLYGLTIYARRRMNFGPRDPRRAREIFLRSALVEGDWETKLPFYAHNRKLIAD
IEQLEHKSRRQDVLVDDELIYAYYDAHVPAGLYDGASFEHWYRETSKGTPRLLYLVRDDL
MRHEAAGVTTDLFPKKTAIAGVEMALTYHFEPGSPRDGVTLAVPLYALNQVDARRCEWLV
PGMLKEKAHLLMKSLPQKLRRHFVPLPEYAAGFVDRATFGQGALLDALIADAREQTGVML
KASDFKLEMLPAHLSMNFKVIDEHGRQLGMGRNLSQLRAELGQQAQRTFQALAARSGATP
TGGTATESSSRGGPAPRGDGKAGGKTGAQAVPGASAASGTGAAAVEPGRYDNLTTWSFGE
LPEMLEIRRGGQTLFGYPALVDRGDHCDLEVFDDPDEAQRQHRAGLRRLFAIQLREQVKY
LEKNIPGLQQMAMQYLHLGTQEALRDQIVDLALERACLQLPWPSDNASFVARKDEGRGRL
TLLAQEIARLAGQILAEYAALQKKLAQAKPFAQAHADLTAQLQRLVGKRFLIDTPYAQLA
HFPRYLKAMAARIDKLKADPSRDARAMSELGPLLQNWQRATSQRRDQGDARLDEFRWLLE
ELRVSLFAQELRTPMPVSVKRLHKVWEALQR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgatgaacgaaatcgacaatctcagcccccgaagccgaaagtgacggcgccg
gggcaaacgcgcgcccaacccagggacccggcgcaatcgcaaacgacgtccgacccgggc
ggcgcgcctgcgaacgcgggccatcgccccggacgctcccgccaaccggatcgcggcggc
caggcgggcgccgccgcgggcaaccgcgcgaccaaagccgcaacggggccgggcactgcc
gcgacggccgcacgtcggccgtcgccggccgagcgtgccgcgcgcgacgccgagcgactc
gccgcacggcaggccgccgccaaccgcgtgcccgaaatcgcattccccgaggcactgccg
gtgtccgcacggcgcgaggagatcgcgcgcgccgtcgccgaccatcaggtcgtgatcgtg
agcggcgagaccggctcgggcaagaccacgcaactgccgaagatctgcctcgcgcttggg
cgtggcctcggcgccggcggcaccggcctgatcgggcatacgcagccgcggcgcatcgcc
gcgtcggccaccgcgcgccgcatcgcggacgaactcggcactccgctcggcgaaatcgtc
ggcttcaaggtgcgtttcaacgacacgctgtccaatggggcatcggtcaagttgatgacc
gacggcatcctgctcgccgagacgcagaccgacccgctgttgcgtgcttacgacaccatc
atcatcgacgaggcgcacgaacgcagcctcaacatcgacttcctgctgggctatctgaag
cagttgctgcccaggcgtccggacctgaaggtcatcatcacgtcggccaccatcgatgcg
gatcgcttcgcgcgccacttcggcaccggcgaaggcgagaccctgcgtccggcccccgtc
atcgaagtgagcggccgactgtacccggtggaagtgcgctatcggccgattcaggacgac
gcgcgcatcgccaacgcggaaggtcgcgagaacagtcgcgccagcgcccgcgatcgtgag
cgcgatctcatggacggtatcgtcgatgccgtggacgaactctgccgcgagggggcgggc
gacgtgctcgtgttcctgcccggcgagcgcgaaattcgcgaagcggcggaggcgctgcgc
aaacatcatccgccgcacacggagattctgccgctcttcgcgcgcctgtccgccgccgag
caggagcgcgtgttcaggccgtcgaacgcccgtcgcatcgtgctcgcgaccaacgtggcc
gagacctcgctgaccgtaccgggcatccgctacgtggtcgatgccggcaccgcgcgggtg
aagcgctactcctaccgcaacaaggtcgagcagcttcagatcgaatcgatctcgcaggcg
gcggccaatcagcgcgcggggcgctgcggtcgcgtggccgacggcgtgtgcattcgtctg
tacgacgaagcggacttccagtcgcgcgcgcgattcaccgaccccgagattctgcgctcg
tcgctcgccgcggtaattctgcgcatgcagtcgctgcgcctgtcgaaagtcgaggaattc
cccttcctcgaaccaccgcccggccgcgcgattgccgacggctaccagttgctgggcgaa
ctgggtgcggtcgacgacgccaaccagctcacgccgcttggtcgtgagctggcgcgtttg
ccgctcgatccgcgcgtcgggcgcatgatcctggccgcgcgcgaccagcagtcgctgcgc
gaagtcctcatcatcgcgagcggactggccgtgcaggacccgcgcgaccggcccatcgaa
gcccaggacgccgccgacaacgcccaccgcaaattcgcggacgagaagtccgaattcctc
tcctggctcaagatatggaagtggttcgaggaggcgatcgctcacaagaagtcgaaccgc
ctgctgacacaggcctgccgcgagaatttcctctcgcaactgcgtctgcgcgaatggcgc
gacgttcacagtcagttgctgaccgtggtgcgcgagcagggttggcgcatcaacgagtcc
gaagccacatacgagcaggtgcaccttgcgctgctcgccggcttgctcggcaacatcggc
tgcaaggccgacgacgatccgcacttccttggcgcgcacggcatcaagttccacatctgg
ccgggctcctcgctcgtgaaaaaggccgggcgctgggtcatggccggtgaactcgtcgag
acgagccggttgtacgcgcgctgcatcgcgcgcatcgagccggaatggatcgagcgtgtg
ggcaagcacctcgtgaagacctcgctgtccgacgcccactgggaaaagaaggccgcgcaa
gtcacggcgtacgagcgcggcacgctctacgggctgacgatctacgcccgccgtcgcatg
aacttcggcccgcgcgatccgcgtcgcgcccgcgagatcttccttcgcagtgcgctcgtc
gagggcgactgggaaacgaagctgccgttctacgcgcacaatcgcaagctgatcgcggac
atcgaacagctcgaacacaagtcgcggcgccaggacgtgctcgtcgacgacgagttgatc
tacgcctactacgacgcacacgtgcccgccggcctttacgacggcgccagcttcgagcac
tggtatcgcgagacgtccaagggcacgcccagactgctctacctcgtgcgcgacgacctg
atgcgccacgaggccgcgggtgtcacgaccgacctgttcccgaagaagacggcgatcgcg
ggcgtcgaaatggcgctcacgtaccacttcgaaccggggtcgccgcgcgacggggtcacg
ctggccgtaccgctctacgcgctcaatcaggtcgacgcgcgccgatgcgaatggctcgtg
ccgggcatgctcaaggagaaggcgcacctgctgatgaagtcgctgccgcagaagctgcgc
cgtcacttcgtgccattgcccgaatacgcggccgggtttgtcgatcgcgccacgttcggc
cagggcgcactgctcgacgcgctgatagccgatgcgcgcgagcagaccggtgtcatgctc
aaggcgagcgatttcaaactggaaatgctcccggcgcacctgtcgatgaacttcaaggtg
atcgacgagcacgggcgtcagctcggcatgggacgcaatctctcgcagttgcgcgccgaa
ctcgggcagcaggcgcagcgcacgttccaggcgctggccgcccgaagcggtgccacgccc
accggcggcaccgcgacggaatcttcgtcgcgcggcggccccgcgccgcgcggcgatggc
aaggcaggcggcaagaccggcgcgcaggccgtaccgggggcgtccgcggcatcgggcacg
ggcgccgcggcggtcgaacccggtcgctacgacaacctgacgacctggagcttcggtgag
ttgccggagatgctcgagatacgccgcggcggccagacgctgttcggctatcccgcgctg
gtcgatcgcggcgatcactgcgacctcgaagtattcgacgatccggacgaagcgcaacgt
cagcatcgggcaggactgcggcgactgttcgcgattcagttgcgcgagcaggtgaagtac
ctggagaaaaacatccccggactgcagcagatggccatgcagtacctgcacctcgggaca
caggaggcactgcgcgatcagatcgtggatctggcgctggagcgcgcctgtcttcagttg
ccatggccgagcgacaacgcctcgttcgtcgcgcgcaaggacgaggggcgtggacgtctc
acgctgctcgcgcaggaaatcgcgcgcctggccgggcagattctggccgagtacgcggcg
ttgcagaagaagctcgcgcaggccaagccgttcgcgcaggcgcatgcggatcttacggcg
cagttgcaacgtctggtcggcaagcgcttcctgatcgacacgccctatgcccagctggcg
cactttccgcgttacctcaaggcgatggccgcgcgcatcgacaagctcaaggccgatccg
tcgcgcgacgcgcgtgccatgagcgagctcggcccgttgttgcagaactggcagcgggcc
acgtcgcaacgccgggatcagggcgatgcgcgactcgacgaatttcgctggctgctcgag
gaattgcgcgtctcgcttttcgcacaggagctgcgcacaccgatgccggtgtcggtcaag
cggctccacaaggtctgggaggcgctgcagcgctga
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