Pandoraea pnomenusa RB38: DA70_16265
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Entry
DA70_16265 CDS
T03067
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppno
Pandoraea pnomenusa RB38
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppno03032
]
DA70_16265 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppno03400
]
DA70_16265 (gyrB)
Enzymes [BR:
ppno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DA70_16265 (gyrB)
DNA replication proteins [BR:
ppno03032
]
Prokaryotic type
DNA Topoisomerases
DA70_16265 (gyrB)
DNA repair and recombination proteins [BR:
ppno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DA70_16265 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AHN75827
LinkDB
All DBs
Position
3856..6333
Genome browser
AA seq
825 aa
AA seq
DB search
MSEQQKQAESGYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA
GYCDDIHVTIHADNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY
KVSGGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVL
GDTDKRGTEVHFLADETIFGNVEFHYDILAKRMRELSFLNNGVRIRLTDLRTGKEDDFAF
GGGVKGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRDG
GTHLTGLRAAMTRVINKYIVESEMAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKD
KLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICSKIVEAARARDAARKAREMTRRKGVL
DGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF
DKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQV
PELIERGYVYIAQPPLYKVKHNKDERYIKDEGELAQYMLKLAMNNAELTPSTGAAPISGD
ALGELTRSYQLADSVIERLSRLYEASVLTAVTEGVEINLDNEEAAKQSAQALEAALSDDP
LAPEITITAVMEDVENADPVAALRVERRHHGNVKLSMITQDFLQSADYAQLQKTAETFKG
LIGEGATIRRGERSQPVSNFKTAMKWLMADAESKVSKQRYKGLGEMNAEQLWETTMDPTV
RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIETNALRAGNIDV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagcaaaagcaggccgaaagcggctatggtgcagcctccatccagatcctc
gagggtctggaggctgtgcgcaagcgtcccggcatgtacattggcgacacgtcggacggc
acgggcctgcatcacctggtattcgaggtgctggacaactcgatcgacgaggcgcttgcc
ggttactgcgatgacatccacgtgaccattcacgcggacaactccatttccgtgacggac
aacggtcgcggcattcccacgggcatcaagttcgacgacaagcacgagccgaagcgtagc
gcggcggaaatcgtgatgacggagctgcatgcgggcggcaagttcgatcagaacagctac
aaggtgtcgggcggtctgcatggcgtgggcgtgtcgtgcgtgaacgcgctgtcgtcgtat
ctgaagctcaccgtgcgtcgcgacggcaagaagcacttcatggagtttcaccgtggggtg
ccgcagaatcgcgagatcgaggtggttgacggcgtcgagacgtctccgctgaaggtgctg
ggcgataccgacaaacgcggcacggaagtgcacttcctcgctgacgaaacgatcttcggc
aatgttgagttccactacgacattctcgccaagcgtatgcgcgagctgtcgttcctgaac
aatggcgttcggattcgtctgacggatctgcgcacgggcaaggaagacgatttcgccttt
ggcggtggcgtgaagggtttcgtcgagtacatcaacaagtcgaagacggtgctgcatccg
acggtgtttcacgtgatgggcgagcgcgacggtatcggcgtggaagtcgccatgcagtgg
aacgacagctacaacgagacggtgctgtgcttcacgaacaacattccgcagcgcgatggc
ggcactcacctcacggggttgcgcgcggccatgacgcgcgtgatcaacaagtacatcgtt
gagagcgagatggccaagaaggccaaggtcgagacgactggcgacgacatgcgcgagggt
ttgacgtgcgtgttgtcggtgaaggtgccggagccgaagttctcgtcgcagacgaaggac
aagctggtgtcgtcggaagtgcgtgcgccggtggaggaatacgtggcgaaggcgttggag
gacttccttcaggaaacgccgaacgacgccaagatcatttgttcgaagatcgtcgaagcc
gcgcgcgcgcgggatgcggcgcgcaaggcgcgagagatgacgcgtcgcaagggcgtgctc
gacggcgtcggtctgccgggcaagctggcggattgccaggagaaggatccggcgctgtgc
gagatttacgtggtcgagggggattcggcgggtggctcggcgaagcagggtcgcgatcgc
aagttccaggcgattctgccgttgcgtggcaaggtgctcaacgttgagaaggcgcgtttc
gacaagctgatttcgagcgagcagatcgtgacgctcatcacggcgcttggttgcggtatc
ggcaaggacgactacaacatcgacaagctgcgttatcaccggatcatcatcatgaccgat
gccgacgtggacggtgcgcacattcgcacgctgctgctgacgttcttctatcgtcaggtg
cctgagctgatcgagcgcggttacgtgtacattgcgcagccgccgctgtacaaggtcaag
cacaacaaggacgagcgttacatcaaggacgaaggcgagttggcgcagtacatgctgaag
ttggcgatgaacaatgccgagctgacgccgtcgacgggcgccgcgccgatttcgggcgat
gcgttgggcgagttgacgcgcagctatcagttggctgacagcgtcatcgagcgattgagc
cggctgtatgaggcgtcggtgctgacggcggtgaccgaaggcgtcgagatcaatctcgac
aacgaggaagcggcgaagcaatcggcgcaggcgctggaggctgcgttgagcgacgatccg
ctggcgccggagatcacgatcacggcggtgatggaagacgtcgagaatgcggatccggtg
gcggcgctgcgtgtggagcgtcggcatcacggcaacgtgaagttgagcatgatcacgcag
gacttcctgcagtcggcggactacgcgcagttgcagaagacggccgagacgttcaagggg
ctgattggcgagggtgcgacgatcaggcgcggcgagcgttcgcagccggtgtcgaacttc
aagacggcgatgaagtggctgatggccgatgccgagagcaaggtatcgaagcagcgctac
aagggtctgggcgagatgaacgcggagcagctgtgggaaaccacgatggacccgacggtc
cgccgcctgctgcgcgtgcagatcgaagacgcgatcgccgccgacggcatcttcaccacg
ctcatgggcgacgacgtcgaaccgcgccgcgctttcatcgagacgaacgcgctgcgggct
gggaatattgatgtttga
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