Pandoraea pnomenusa RB38: DA70_21765
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Entry
DA70_21765 CDS
T03067
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppno
Pandoraea pnomenusa RB38
Pathway
ppno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA70_21765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppno03019
]
DA70_21765
Enzymes [BR:
ppno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DA70_21765
Messenger RNA biogenesis [BR:
ppno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DA70_21765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHN76811
LinkDB
All DBs
Position
complement(4175471..4176952)
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AA seq
493 aa
AA seq
DB search
MADVTAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRSYAGHTPLRNTVV
FGGVDMNPQKDTLRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNEIKKLASSYLTNPVTIEVARRNATADTVEQIVYEVDE
DDKRAAVVQILGERDLKQVIVFVNSKIGASRLARQLERDGIVTAAIHGDKSQNERMQALE
AFKQGGIRALVATDVAARGLDISDLPGVINYDLPYNAEDYVHRIGRTGRAGASGEAISLC
APDERKQLVEIEKLIKRELKRCQLTLERRSRSRDDRSDRHERGDRGERSERHSRHEGLRV
GRTGGGAPRRVRPEDEFFYKPYEPSPSASDAQRDSNRAAQEAGAPTAFGALPEKAPKRQV
AALLAGFPRKAGN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaactgctgttccgacccccggcttcgatagctttgggctgcatgcggac
atcttgcgggccattgccgagcagggctacacccagccgacgccgatccaggcgcaggcc
atcccggtggtgctgtccggtcgtgacgtcatgggtgccgcgcagacggggaccggcaag
accgcgagtttctccctgccgatcatccagcggctgctcccggacgcgaacacgagtgca
tcgcccgcccgccatccggtgcgcgcgctgatcctcacgccgacgcgcgaactcgccgat
caggtggccgacaacgtgcgctcgtacgcggggcacacgccgctgcgcaacaccgtggtg
ttcggcggcgtcgacatgaacccgcagaaggacacattgcgccgcggtgtggaaatcctg
atcgccacgccgggacgcctgctcgatcacgtcgagcaaaagacggtcaacctcagccag
gtcaagatgctggtgctcgatgaagccgaccgcatgctcgacatgggcttcctgccggat
ctgcaacgcattcttaacctgctgcccaagcagcgtcagacgctgctgttctcggcgacg
ttctccaacgaaatcaagaagctcgcttcgagctacctcacgaatccggtcacgatcgaa
gtggcgcgtcgtaacgcgacggccgacacggtcgagcaaatcgtctatgaggtcgacgaa
gacgacaagcgcgctgccgtggtgcagattctgggcgagcgcgacctcaagcaggtcatc
gtgttcgtcaacagcaagatcggcgcgagccgtctcgcgcgtcagctcgagcgcgacggc
atcgtgacggccgccattcacggcgacaagtcgcaaaacgagcgcatgcaggcactcgag
gcgttcaagcagggcggcatccgtgcgctggtcgccaccgacgtggccgcgcgcggtctc
gatatttccgacctgccgggcgtgatcaactacgatctgccttacaacgccgaggattac
gtgcaccggattggccgcacgggccgtgcgggggcgtcgggcgaagccatttcgctgtgc
gcgccggacgagcgcaagcaactcgtggaaatcgaaaagctgatcaagcgcgagctcaag
cgctgccagttgacgctggagcgccgcagccgttcgcgcgacgaccgcagcgatcgccat
gagcgcggcgatcggggtgagcgcagtgagcgccacagccgtcatgagggcttgcgtgtg
ggtcgcaccgggggtggcgcgccgcgtcgtgtgcgcccggaggacgaattcttctacaag
ccgtacgagccgtcgccgagcgcatcggacgcgcaacgcgacagcaaccgtgccgcacaa
gaggccggcgctccgacggcattcggcgcgctgccggaaaaggcaccgaagcggcaggtc
gccgccctgctcgcggggttcccccgcaaggcaggcaactga
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