Paenibacillus polymyxa M1: PPM_0008
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Entry
PPM_0008 CDS
T01968
Symbol
gyrA1
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppo03032
]
PPM_0008 (gyrA1)
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_0008 (gyrA1)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PPM_0008 (gyrA1)
DNA replication proteins [BR:
ppo03032
]
Prokaryotic type
DNA Topoisomerases
PPM_0008 (gyrA1)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPM_0008 (gyrA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
NTase_sub_bind
RUNDC1
Motif
Other DBs
NCBI-ProteinID:
CCC82945
LinkDB
All DBs
Position
7749..10313
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AA seq
854 aa
AA seq
DB search
MADQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSP
DKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAA
MRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMA
TNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGS
VTMRAKTTIEEIGNKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGM
RIVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEV
IRRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQA
QAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFAD
DRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDE
DFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVI
PIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMI
IGTAQGMSIRFPESDVRSMGRSATGVKGISLDESDAVIGMDIVNTDLDILIVTAKGYGKR
TPAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTM
GRNTQGVRLINIRDDDSVATVCRANKNEEQDELLEDLLEDGGTGEEPTLSSAEPTLEVNT
EDTEGNDSESSEDE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcaaaataactcgcaaatcatcaatagggatatcggagtggaaatgcgcgaa
tcctttatggattatgccatgagtattattgttagccgtgccttgcctgatgtgcgggac
ggactgaagccggtacaccgtcgtattttgtacgcgatgtccgagctaggcatgtcgcca
gataagccttataaaaaatcagcaagaatcgtcggtgaagttatcggtaagtaccaccct
catggtgatacggctgtgtatgatacgatggtgcggatggcgcaggatttttccttgcgt
tatatgttggtggatggacacggtaactttggctccgtggatggagatatggcagcagca
atgcgttacactgaagcacggctgtccaagatagccatggaaatgctccgtgatttgaac
aaagagaccgttgattttatgcctaactacgatggtgaagagaacgagcctgtcgtattg
cctgcacgttatcctaacttgctggttaacggtgtcggcgggattgcagttggtatggca
accaatattcctccgcataacttgggagaggttatcgatggtgtacaagcgctgatcgaa
aaccctgacattacgccgatggaacttatggattacattcaagggccggatttcccgaca
gcaggttatatcttaggtcgctcaggcattcgccaggcgtatcagactggccgcggatct
gtgaccatgcgtgcgaagaccaccatagaagagattggcaataaagcacggattatcgtg
catgaactgccttaccaagtgaacaaggctcgtctggtcgagaaaattgctgaattagta
cgtgacaagcgtattgaaggcattacggatcttcgagatgaatccgaccgtacgggtatg
cgtatcgttatcgagttgcgtagagatgtgaacccgaacgtcgttctgaataatttgttt
aaacatacagccatgcagtccaattttggtatcaatatgcttgcgattgtaaacaatgag
ccgaagattttgaacctgaaagatgtcttgtattattatctcaagcatcagattgaggtt
attcgtcgtcggacagaattcgatctgaaaaaagccgaagctagagcacacattctggaa
ggcttgcgtattgctcttgaccatctggacgaagttatttccttgattcgttcttcccaa
actgcagaagcagcccgtgaaggactgattgagcgtttctcgctgactcttgagcaggct
caggctattctcgatatgcgtctgcaacgcttaaccggtttggaacgtgagaagatcgag
aacgaatataacgagctaattcaaaagataatggaataccgtgaaattttggcgaatgag
catctggtactcaacatcattagtgaagagctgaatgagctgaaaggacgcttcgccgat
gatcgtcgcactgaaattacagtgggtgaagaaagtattcttgatgaggatctcattccg
cgtgaagacgttattattactgtaacccatactggatatatcaaacgccttcctgttact
acgtatcgcagtcaaaaacgcggtggtcgtggtgtagtaggtatggataccaaagatgag
gacttcgtagagcatctgttcattacgaattcacatcatcatttgttattctttacggac
aagggcaaggtataccggattaaggcttatgagattccagacttaagccggacagctcgg
gggacaccgattattaacctgattcagattgaacagggtgagtcgatcaatgcggtaatt
ccaattgaggaatttgtggaggacagttatctattctttgcgacccaacatgggattatt
aagaaaacacctcttgatgactatgcgaatatccgcaaaggcggcctgattgccattaac
ttgcgcgaagatgacgccctgatcgaagtgaagctgactgatggacagcaggaaatgatt
atcggcacagcacaagggatgtctatccgtttccctgaaagtgatgtacgatctatggga
cgtagtgctacaggagttaaagggattagtcttgatgaaagtgatgctgtaatcggcatg
gatatcgtcaataccgacctggatattctgatcgtaacagccaagggttatggcaaacgt
acccctgctgtggattatcgtatccagagccgtgggggcaaggggatcaagacgattaac
gttaccgataaaaatggtccagttgtcggcctcaaggttgtaaaagccgaagaggacttg
atgattattacagctagtggcaccttgatccggactagcatgggggaaatctccacgatg
ggtcggaatacgcaaggggtaagactgattaatattcgcgatgatgattcggttgcaacg
gtttgtcgtgcgaacaagaatgaggagcaagatgaactgcttgaggatttattagaggat
ggaggaactggtgaggagccaactctatcatctgctgaaccaactcttgaagtgaataca
gaagatacggaaggtaacgattcagaatcttctgaggacgaataa
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