Paenibacillus polymyxa M1: PPM_0116
Help
Entry
PPM_0116 CDS
T01968
Symbol
yfiC1
Name
(GenBank) lipid A export ATP-binding/permease protein msbA
KO
K18888
ATP-binding cassette, subfamily B, multidrug efflux pump
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
PPM_0116 (yfiC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppo02000
]
PPM_0116 (yfiC1)
Transporters [BR:
ppo02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
PPM_0116 (yfiC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_22
SMC_N
MMR_HSR1
ABC_ATPase
DUF87
RsgA_GTPase
AAA_24
TsaE
AAA_29
AAA
NTPase_1
AAA_23
Zeta_toxin
AAA_16
nSTAND3
NACHT
DO-GTPase2
AAA_18
Motif
Other DBs
NCBI-ProteinID:
CCC83053
LinkDB
All DBs
Position
complement(150922..152661)
Genome browser
AA seq
579 aa
AA seq
DB search
MSGKETWRRLLTYVGQYKTTTFWVIISAILSVLASLVGPYMIGRAIDHMVNQGAVDFRGI
AQILYGLGVVYVVGSLFSWLLTYLTNRIAFQTVNDMRRELFDHFNILPLSFHDNHPQGDS
ISRFVNDMDAVSDGLLQGFSTLITGLITIIGSIVLMLYISPVMTLVVLVSAPITYVVARF
ITTKSQRMFREQAKILGSLNGYVEEMIGGQRVVTAFHYENRSLEEFSARNEQLYQAGVKS
QFYGSLSNPSTRLVNNMTFSVTAMIGCISIILGGISVGGLSSFLIYTNLFAKPFNEITGV
LTQFQAATASAQRIFAILDSPPEQPEKSNAVQPERSKGTILFDHVKFSYNPERTLITNFS
LEVKPGTRVAIVGQTGAGKTTLVNLLMRFYDVDSGSISIDGVNINDMSRDSLRTNFGMVL
QDTWLFSGTIRDNIAYGKPEATDEEVIAAATAANAHSFIKRLPHGYDTVISGSGDSLSQG
QRQLLTIARVILVDPPMLILDEATSSIDTLTEARIQKAFMKMIDGRTSFVIAHRLSTIRE
ADLILYMKNGDVVESGTHEGLLASGGHYASLYNSQFTTA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcaaggaaacctggagaagattgttaacctatgtcggtcaatataaaacaaca
acattttgggtcatcatcagtgctattcttagcgtgcttgccagtctggtcggaccctat
atgattggccgggctatcgaccatatggtaaatcagggagcggtagactttagaggtatt
gcacagattctatatggactaggcgttgtatatgttgtaggcagtctatttagctggttg
ctcacatatttgacgaaccgcattgcttttcagactgtaaatgatatgcggcgggagtta
ttcgatcattttaatatccttccgttaagctttcatgacaatcatccgcaaggagatagc
attagccgttttgtgaacgatatggatgccgtgtccgatggattgttgcagggcttctcc
accttgatcaccgggttgattaccattattggttcgattgtacttatgttgtatatcagc
ccagtgatgacgttggtggtattggtgtctgccccaatcacatatgtcgttgcacggttc
attactacaaaatcgcaacgcatgttccgtgaacaggccaaaattttgggaagcttgaac
ggttatgtggaggaaatgatcggcggacagcgggtagttactgcctttcactatgaaaac
cgctcgcttgaggaattttccgcccgaaacgaacaattatatcaagccggagtgaaatcg
cagttttatggatctttgtccaacccttccactcgattggtcaacaacatgactttctcc
gtcaccgctatgattggctgtatttcgatcattttgggcgggatttcggtaggcggttta
tcgagttttctcatttacaccaatttgttcgccaagccctttaatgaaattacaggtgtg
ctgactcagtttcaggccgctacagcttctgctcagcgtatatttgctattttggattca
ccgccggagcaaccggaaaagtcgaacgccgtgcagccggagcgcagtaaaggtacaatt
ctgtttgatcatgtgaaattttcctataatccggaacgaacactcattacgaactttagt
ttggaggtcaagccaggcactcgcgtagctattgtcggacagaccggagcaggcaaaaca
acactcgttaacctgctcatgcgcttttacgatgtggacagcggttcgatctccatcgac
ggagtgaatatcaacgatatgagccgggacagcctacgtactaactttggtatggtgctt
caagatacatggctgttcagcggaacgatccgggacaatatcgcttacggaaagccagag
gccacggacgaagaagtcattgcggctgcgacggctgccaatgcgcatagctttatcaag
cgcctgcctcatggttacgatacggtcatcagcggatcgggcgatagcctatcgcaaggg
caaaggcagctgctcactatcgcaagggtgatcctcgtcgatccacctatgctcattctg
gatgaagcaaccagcagtatagacacccttacagaagcccggatccaaaaggcttttatg
aaaatgatcgacggacgcaccagctttgtcatcgcccacaggctatcaaccatccgcgaa
gcagatctaattctatacatgaaaaacggcgatgtcgtcgaaagtggtactcatgaagga
ctgctcgcaagcggtggccattatgcctcgctctataacagccagttcactacggcctaa
DBGET
integrated database retrieval system
