Paenibacillus polymyxa M1: PPM_0126
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Entry
PPM_0126 CDS
T01968
Symbol
ysh1
Name
(GenBank) endoribonuclease
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PPM_0126 (ysh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppo03021
]
PPM_0126 (ysh1)
03019 Messenger RNA biogenesis [BR:
ppo03019
]
PPM_0126 (ysh1)
Transcription machinery [BR:
ppo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PPM_0126 (ysh1)
Messenger RNA biogenesis [BR:
ppo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PPM_0126 (ysh1)
U7-dependent histone pre-mRNA processing factors
PPM_0126 (ysh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_6
Lactamase_B_3
Anti-Pycsar_Apyc1
Gp49
Motif
Other DBs
NCBI-ProteinID:
CCC83063
LinkDB
All DBs
Position
163637..165022
Genome browser
AA seq
461 aa
AA seq
DB search
MMMTKLRIWGGAGEHGRSCYVFEGKQHRIMLDCGVKKEGIGQYPIFPPQKVKELTTVLLS
HAHEDHSMALPLLYKYGYRGEVWTTKATAEQLGSYFRSWQTYVESRGGELPYSEQDIQSI
TYRYLEDGAPSGVWCEACPGVRMMWGRSGHLAGAVWYIIEMEGKRLFFSGDYSRESELLA
ADAPDLCMGEGINDLPECKPQSYLVDISIMDNAYGMDIDPQPVKLERLRVEMEQILWSGG
HVLLPVPAFGRGQELIVWASEQFPEQAIIVEPDLWHGLKQLNRWREWLRPGASTRIKHVL
NSDRVFVPRDAAERISLLERNTATIIVTRDGMMDSPQARWYYQYLSDNRHMLNDMDSGEN
IRNSVILTGHASNGSFGKHLLERADSNDICIARHLTYKVHQGLSDVRQMLKDLPSKQAVL
VHAPKPQTDLVRDVLIREENNAHGGPAREVHSVEPGSTIEV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaccaagcttaggatttggggcggagcgggcgaacatggccgctcctgttat
gtttttgaaggaaagcagcatcgtatcatgctggattgtggcgtaaaaaaggaaggaatc
gggcaatatccgatttttccgccacagaaggtgaaggagctaactactgttttgctgtct
catgcacatgaggatcattccatggcgctccccttactgtacaagtatggataccgggga
gaggtttggacgaccaaggccaccgctgagcagctgggctcctattttcgctcctggcag
acttatgttgaatcgagaggtggtgaattgccttacagtgaacaggatatccaatccatt
acctatcgctatctagaagatggagcgccttcaggagtgtggtgtgaagcttgtccgggt
gtgagaatgatgtggggacgcagtggacatttggctggtgcagtgtggtatatcatagaa
atggaagggaagcggttgttcttttctggagactatagccgtgagtctgagctgcttgct
gccgatgcaccggacttgtgtatgggggaggggataaatgaccttcctgaatgcaagcca
cagtcctatctagtggacatatctatcatggacaatgcctatggcatggatatagacccg
cagcctgttaagctggagcggctgagggtcgagatggagcagatattatggtctggcggt
catgtgttgttgccagtgcctgcctttggcagaggacaggagttgatcgtatgggccagt
gagcaattccccgaacaagcaataattgtagagcctgacctgtggcacggattgaaacag
ttaaatcgctggagagagtggcttcggccgggagcttccacgcgaataaaacatgtgtta
aacagtgacagggtgttcgtgcctcgtgatgctgcggaacgaataagtctgctagaacgg
aacacggccactattattgtaacaagggacggcatgatggattccccgcaggcacgttgg
tattatcaatatctgtcggataaccgccatatgctgaatgatatggacagcggagaaaac
attaggaacagtgtgatattgaccggtcatgcttccaatggttcttttggaaagcatctg
ttggaacgtgcggactccaatgacatctgtatagctcggcatttgacttacaaggtgcat
cagggattatcggatgtgaggcaaatgttgaaggatctgcctagcaaacaggctgtactc
gttcatgcaccaaaaccgcagaccgaccttgtacgagatgtgttgataagagaagaaaat
aatgcacatggaggtcctgccagagaagttcattctgtggagccaggttcaacgatagag
gtctag
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