Paenibacillus polymyxa M1: PPM_0176
Help
Entry
PPM_0176 CDS
T01968
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPM_0176 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppo03019
]
PPM_0176 (vacB)
03016 Transfer RNA biogenesis [BR:
ppo03016
]
PPM_0176 (vacB)
Enzymes [BR:
ppo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PPM_0176 (vacB)
Messenger RNA biogenesis [BR:
ppo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPM_0176 (vacB)
Transfer RNA biogenesis [BR:
ppo03016
]
Prokaryotic type
tRNA degradation factors
PPM_0176 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
OB_RNR_1st
S1_RRP5
DUF7422
TFA2_Winged_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CCC83113
LinkDB
All DBs
Position
220484..223093
Genome browser
AA seq
869 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFDIKDAEEFREFLKLLNALEEDGKILLTRTNRY
GVPERMDLQRGRLQAHAKGFAFLIPEDREHPDVYIHANDLKSAMNGDTVLVRVTSKGPAG
GRLEGEVVRIVKRAVLQVVGVFQSHEAYGFVLPDDKRINRDIFIPKDSFNGAVNGQKVVV
RIVSYPEGRAAAEGEVLEVLGHKDDPGVDILSVIRKHQLPEAFPDEVMAEADQAPDAITE
EEIIRQGRRDLRDRIIVTIDGEDAKDLDDAVNVERLPNGNYRLGVHIADVGYYVRENSKL
DLEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFNEHMKVVKHDIFT
SVIKTKERMTYTNVRKILEEEDAELMERYKDLVDVFRTMKDLALKLRANRMRRGAVDFDF
DEAKVIVDDEGKAVDIVKRDRTIAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGHQIKGRGNSIHPRALQTLLEDIQGTKEQTVLSTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVIREVLENGGALTDERQEYLTARMPDIAQQ
SSERERVAVDAERDTEQMKKAEYMLDKVGEEFEGIISSVTSFGMFIELDNTVEGLTRLSA
LTDDYYHFDEQHMALIGERTSKVFRIGDEVKVRVARVNMEDYTIDFELVDMKQRQRRERT
GGSGQGGDFARGEGRAKGRGREGRDRKGGKDKAGRERKGGREAAGKPKEGGNGGISTTGR
AGRGGGNGVGTGSPGSFGFGSGKGGYNSPATGASKRRKKTSASGIFIGDAATPGSDARPG
GEGAARRKRKKKGANGGNSTAGFVRKKKK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgataacagagcaacaactacttgatttcatgcgcgagaccgcatacaagcctatgaca
taccaggagctggagcaacattttgacattaaggatgcagaagagtttcgtgaatttctt
aagctcttgaacgcattggaggaagacgggaaaattctgctgacccgcacgaaccgttat
ggtgttccagaacggatggatttgcagcgcgggcgtttgcaggcccatgccaagggcttt
gcttttttgattccagaggaccgggagcacccggatgtatacattcatgctaacgactta
aagagcgcgatgaatggagatacggtactggtaagagtaacatcaaagggacctgcgggt
ggccgattagaaggcgaagttgtgcgaatcgtgaagcgcgcagtgcttcaggtagtcggt
gtgtttcagagccacgaagcatacggttttgttttgccggatgataaacgtattaaccgg
gacattttcattcctaaggacagctttaacggagctgtaaacggacaaaaggttgtcgtg
cgtattgtgagctatccggaaggacgtgcagcggcagaaggcgaagtgctggaggtgctg
ggtcataaggatgatccgggcgttgacatcttgtccgttattcgcaagcatcagctcccg
gaagcttttccggatgaagtgatggcagaagccgatcaggctcctgatgcgattacggaa
gaagagattatacgtcagggacggcgtgatttgcgcgatagaatcattgttaccattgac
ggtgaggatgccaaagatctcgatgatgcggttaatgtagagcgcttgccgaacgggaac
taccgtctgggcgttcatattgctgacgtaggttattatgtgcgtgagaactccaagctg
gatctagaggcatataaccgcggttgtagtgtgtatttggttgaccgtgtcattccgatg
cttccacatcgactttcaaacggaatttgttcattgaatcctcaggtggatcgactgact
ttatcctgtgagatggagttcaatgagcatatgaaggtcgtaaagcatgatatttttacc
agcgtgattaaaacgaaggaacggatgacctatactaacgttcgcaaaatcctcgaagag
gaagatgcagaactgatggaacggtacaaggacctggttgatgtattccgtacgatgaag
gatttagcattgaagctacgtgcgaatcggatgcgccgcggtgcagttgattttgatttt
gatgaggccaaagtgattgtagatgatgaaggcaaagctgtcgatattgtgaagagggat
cgtacgatagccgaacaaataatcgaagagtttatgctggcggccaatgaaacggtagcc
gaacattttcactggctcaaggtaccgttcttgtaccggattcatgaggaccccgatcca
gagaagctgcaaaactttatggcttttgcagctaattttggtcatcagatcaaaggtcga
ggaaattccattcatccgcgtgcactccaaacattgttagaagacattcagggtacgaag
gagcaaacggtgcttagcacaatgatgctgcgttcgatgaagcaggcaaaatatgatgcg
gagtctacaggacattttggactggctgcggagtattactctcattttacatcaccgatt
cgtcgttaccctgacttggtaattcaccgtgtcattcgtgaggtattggagaatggcggg
gctttgacagatgagcgtcaggaatatttgactgcacgcatgccagatattgctcagcaa
tcctccgagcgtgaacgtgtggctgtggatgcagagcgcgacacagaacagatgaaaaag
gctgaatatatgctggataaggtcggcgaggagttcgaagggatcatcagcagtgtaacc
agctttgggatgttcattgagctggacaacacagtcgagggcttaacgcgtctgagtgca
cttacggacgactattatcattttgacgagcagcatatggcgttaatcggagaacgcacc
tctaaggtattccgcattggggatgaggttaaggttcgtgtcgcgcgtgtgaatatggaa
gattacacaattgactttgaactcgtcgatatgaagcaacggcaacgtcgtgaacggacg
ggaggctcgggccagggtggagattttgcacgtggcgagggccgtgctaaaggcagaggc
cgagaaggacgtgaccgtaagggcggtaaggacaaggctggtagagagcgtaaaggcggg
cgtgaggcggctggaaagcctaaagagggcggcaacggaggaatcagcaccacaggtcgc
gcaggtcgtggtggtggaaacggtgtcggtacaggctcgccaggcagcttcggctttggt
agtggcaagggcggatacaattctccagcaacgggtgcaagcaagcgacggaagaagacg
tctgccagcgggatattcattggtgatgcagctaccccaggtagtgatgccagaccaggt
ggtgaaggcgcagcacgtcgcaagcggaaaaaaaagggcgctaacggcgggaatagcacc
gctgggtttgtgcggaaaaagaaaaagtag
DBGET
integrated database retrieval system
