Paenibacillus polymyxa M1: PPM_0562
Help
Entry
PPM_0562 CDS
T01968
Symbol
yjcD
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo03420
Nucleotide excision repair
ppo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPM_0562 (yjcD)
03430 Mismatch repair
PPM_0562 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_0562 (yjcD)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPM_0562 (yjcD)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPM_0562 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
PPM_0562 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCC83499
LinkDB
All DBs
Position
complement(696007..698442)
Genome browser
AA seq
811 aa
AA seq
DB search
MNPNPAFYPRPIGVPYSTTSPQARRASMDTSITLVPDTDQDAAYFRAIENAGIHLNRPQI
QAVRHGKGPLLTLAGAGCGKTTVLAARAGYLMAMRDVPASSILLVTFTSKAAAEMKLRIA
GLPGVRPAAARAVQARTFHSFALAMLRHRGVQDEVFGETQAQHTVMKMMLRQLGLSEAFQ
PESLLSALSAWKAEGRSADELPETIREEADAKRAMLAYEAWKQERSKMDFDDILLRASVL
LRDPDVLQPLQRRFSYIMVDEFQDTNALQYEMVQRLAAKHRNLMVVGDDDQTIYTFNGAR
QESILEFDKVYKDAKVITLDINYRSDARILGLGSNIVAKNVHRRSKRLAAAGREGLPPQF
ATPSGPEEEAGHIVTHLLGQVEEGRLRYRDIAILHRTASGSRSIFEQLIMRDVPFIQYGA
GAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTLGPLYVSREAGMEWIMREEKQQAKKYPL
IHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGDTGAWTHYK
ETMQESLEELETAAKRFDTVEAFVNFADELSERHRQMESLRREEDSDAVRLMTIHRAKGL
EFPCVYWIGASEGILPHSSALHSELPEDRRAGAAPATAVDNDAALEEERRLAYVAVTRAK
ELLYITSPASNHGKPAAVSRFLLEAYGVTPPETSKPDTRRSSFGQPKGTSGYGSRAGGGS
PASGTATRVSSRPGSTPAATTARTASATARSQTEPRVDVPVWKCTDAACKAWMRRDTVGG
RRTTGASAGTPPVCPLCSSPMTEGTRNIPAR
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaaatcctgcattttaccctcgacccatcggggttccttattcaacgacgagc
cctcaggcacgtcgagcttctatggataccagtataacgctggtacccgacaccgaccaa
gacgcggcttattttcgtgctatagagaacgcgggcattcatctgaaccgcccgcagatt
caggctgtacgccatggtaaaggcccccttctaaccctggcaggggctggctgcggtaaa
accacggttctggctgcccgtgctggctacctcatggcgatgcgggatgtccctgcatcg
tccatcctgctggtgaccttcaccagcaaagcagctgccgaaatgaagctgcgcatcgcg
ggactacccggtgtgcgacctgccgctgcacgcgcagtacaggcgcgtaccttccactca
ttcgctttggcgatgctgcgacatcgcggtgtgcaagatgaagtgttcggtgaaacacag
gcccagcataccgttatgaaaatgatgctgcgccagcttggactgagtgaggctttccag
ccggaaagcctgctgtccgccctctccgcctggaaagcggaaggccgtagcgcagatgag
ctgccggaaaccatacgcgaggaagcggatgccaagcgtgccatgctcgcctatgaagcg
tggaaacaggaacggagcaaaatggattttgacgatattctgctgcgtgcctccgttctc
ctgcgtgatccggatgtgcttcagccgcttcaacgacgtttttcctatatcatggtcgat
gaatttcaggatacgaatgccctgcaatacgaaatggtgcaacgattggctgcgaagcat
cgcaatctgatggtcgtcggagatgatgaccagacgatctatacctttaatggagcccgc
caggaatccattctggagtttgataaggtctataaagatgcaaaggtcattactcttgat
attaattatcgcagtgatgcacgcattttggggctgggctccaacatcgtcgccaaaaat
gttcatcgacgctccaaacgtcttgcggctgccgggcgtgagggcttgccgccacagttt
gccaccccatctgggcctgaggaagaggcgggacatattgttactcatctgctcggacag
gtagaagaaggtcgtcttcgctaccgggacatcgctattttacatcggacagccagcgga
agccgatctatttttgagcaattaattatgcgggatgtcccatttattcagtacggagca
ggagccgtattttacgatcagtctctgattcgtcccttaatggatcacttgcgcttgtcg
ctgaatccccgccgaatggaatccattccaagtacccttggaccgctgtatgtctcccgt
gaggctgggatggaatggattatgcgcgaagagaaacagcaggctaaaaaatacccgcta
atccacctcagccgctgggatcgactacgtgattttcagcgtgaacaggtgaaagaacgc
attcggttgattcgcagtctcactaccatgaagcctgcctatgccattcaagaaatgcgg
cgcgtcttttatgacaagtatttggaaagcggagatacgggcgcgtggacacattataaa
gaaacgatgcaagaaagtctggaggagcttgaaacggcagccaagcgctttgacacggta
gaggcattcgtcaactttgcggacgagctttcagagcgccaccgccagatggaatctctg
cgcagagaggaagacagcgatgctgttcggctcatgacgatccaccgtgccaagggactg
gagttcccttgcgtatattggatcggagcaagtgaaggcatccttccgcatagctcggct
ctacacagcgagctgccagaggatcgtcgggcaggcgccgcccccgcaacggctgtggat
aacgatgctgcgctggaggaagaacgccgcctcgcttacgtggccgtcacccgggcgaag
gagctgctgtacatcacctcccccgcctccaatcacggcaagcctgccgccgtgtctcgc
ttcttgctggaagcctatggggtcactccccccgagacttccaagccggacacgcgtcgc
agcagctttggccaaccgaagggtacttcgggttatggcagccgggccggtggtggttcg
ccagcgtctggcacggcaacccgcgtgagcagcagaccggggtcaaccccagcagccact
acagcacggacggcctcggcgacggctaggtcacagacagagccacgcgtcgatgtgcct
gtgtggaaatgcacggacgccgcctgcaaggcgtggatgcggcgcgacacagtaggtgga
cgccgcaccacgggggccagtgcaggcacgccaccggtgtgtccgctttgctcctccccg
atgacggagggaacgcgcaatatcccggctagataa
DBGET
integrated database retrieval system
