Paenibacillus polymyxa M1: PPM_0779
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Entry
PPM_0779 CDS
T01968
Symbol
topB1
Name
(GenBank) DNA topoisomerase III
KO
K03169
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppo03032
]
PPM_0779 (topB1)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPM_0779 (topB1)
DNA replication proteins [BR:
ppo03032
]
Prokaryotic type
DNA Topoisomerases
PPM_0779 (topB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
DNA_ligase_ZBD
CoiA_N
Lar_restr_allev
Auto_anti-p27
DUF8259
DUF7351
Motif
Other DBs
NCBI-ProteinID:
CCC83716
LinkDB
All DBs
Position
940082..942217
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AA seq
711 aa
AA seq
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MKVLVLAEKPSVAREIARVMGSREKHKSYIEGPKYVVTWALGHLVGLAEPEDYDSKYATW
NLEDLPILPKNSKLKVLRESNHQFKAVQQLMKRQDIGELIVATDAAREGELLARWIIQMA
NWKKPFRRLWISSQTDKAIKAGFAKLLPGQQFDRLYESARCRAEADWMIGLNVTRALTVR
YNAQLSAGRVQTPTLGMIMEREKEITQFRSQEYDTLTADFGHFQATWRAENGDSRMFDRT
QAETLRHRLEGAKGTVVSVKKSEKNEPHPLAYDLTELQRDANQRYGFSAKQTSNVLQRLY
EQHKLVTYPRTDSRYLTSDMVDSLKERLSSVAVGPYASLARPLLRNKLPITKRVVDDSKV
TDHHAIIPTEQTLLLNQLSPEERKLYDLIARRFISLFYPPARYDAVAVSVMVGQETFQVK
GTTIKDSGWRAVYDESHYELDDEEIDDRENNGRGVILPELKKGDSVQLQRCIVRAGRTMP
PKRYTEAALLAQMEKHGLGTPATRADLIEKLVSSDTIERQGNVMHPTGKGKQLIELAAPQ
LRTPELTARWEAELERIARGQGQPEPFLNSIRAMAKELVSTVKNSSAEYKPHNVTNSHCP
DCGTKLLEKKGKKGKFLVCPSADCGYRRSGEKRLSNRRCPQCHKKMEMKEGKAGLYVRCL
PCGITETLDKDKQRVNKREQQKLVKQFEKKDSFGSSLGDLLKAAMEQKQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtattggtattggcagaaaaaccatccgtggccagagagattgcacgtgtgatg
ggcagccgagagaagcataaaagttatatagaaggacctaagtatgtagtgacatgggct
ttgggtcatttggtcggattagcagagcctgaggattacgattctaagtatgcgacttgg
aacttggaggacttgcccattcttccgaagaactccaagttaaaggtattgcgggaaagt
aatcatcagttcaaagctgtacagcagcttatgaaacgacaggacattggagaacttatc
gtagcaacagatgctgctcgtgaaggagaactgctggcacgatggattatacaaatggca
aactggaaaaagcctttccgacgcttatggatttcctcgcagacggataaggcaattaag
gcaggtttcgcgaaattattgcctggccagcagtttgatcgtttatatgaatcggctcgc
tgtagggctgaagcagactggatgattggtctcaatgtaacccgcgcgttaacggttcgt
tataacgctcagctttcggctggaagggtacagacaccgacactggggatgattatggaa
cgtgagaaagagatcacccagtttcgttctcaggaatatgatactttgacggctgatttt
ggccattttcaggcaacatggcgggcagaaaatggggattcacgtatgtttgaccgtact
caggcagagactttgcgccacaggcttgagggggccaaaggtacagttgtgagtgttaaa
aagagtgaaaaaaacgagcctcacccgctggcgtatgacttaactgagctgcaacgagat
gctaaccagcgctacggcttctcagccaaacagacgtccaatgtccttcagcgtctgtat
gagcagcataagctggtgacctatccgcgtacagatagccgttatcttacatccgatatg
gtggattcacttaaggaaaggctcagtagcgtagcagtaggtccgtatgcttctttagca
cgtccgttattgcgtaacaaattgccaatcacaaagcgagttgtggatgatagtaaagtc
acagatcaccatgcgattatacctactgagcagacattattgcttaatcagttaagccca
gaggaacgtaagctgtatgatctgattgcacgccgttttatcagtttgttctacccacct
gcacgttatgatgctgtagctgtatcggtcatggtggggcaggaaacatttcaggtaaaa
ggtacaaccataaaagatagtggttggcgtgctgtatatgacgaaagtcattatgaattg
gacgatgaagagatagatgatcgtgaaaataatggacggggcgttattttgcctgagctg
aaaaaaggagactccgtccaattgcagcgttgtattgtacgagctggacgaacgatgccg
ccgaagcgttatacagaagcagccctgctcgctcagatggaaaagcacggcctgggtaca
ccagctactcgtgcagatctgatcgagaaactcgtcagctcggatacgatagagcgccag
gggaacgtgatgcatccaactggcaaaggcaagcaactgatcgaattggcggctccacag
ctacgaacgcccgaattgacggcacgttgggaagcggagttggaacggattgcccgtggt
caaggacaacctgagccatttttgaattctatccgtgctatggcgaaagaattggtttct
actgtgaaaaatagcagcgcggagtacaaaccccataacgtaacgaatagccattgtccg
gattgtggtacaaagttgttggagaaaaaagggaagaaaggcaagttccttgtatgtcca
agtgcggattgtggttaccgtcgttcaggggaaaaacgcttgtccaatcgacgttgtcca
cagtgtcataaaaaaatggaaatgaaagagggcaaagcaggtctgtatgtaagatgctta
ccctgcggcattacggagacgctggataaggacaagcaacgggtaaacaaacgggaacag
caaaagctagtaaaacagtttgaaaagaaggattcctttggctccagtttgggggatttg
ttaaaagcagcaatggagcaaaagcagggcgaataa
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