Paenibacillus polymyxa M1: PPM_0838
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Entry
PPM_0838 CDS
T01968
Symbol
yefA
Name
(GenBank) RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppo03009
]
PPM_0838 (yefA)
Enzymes [BR:
ppo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PPM_0838 (yefA)
Ribosome biogenesis [BR:
ppo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPM_0838 (yefA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
PrmA
Met_10
Cons_hypoth95
Methyltransf_11
RrnaAD
Methyltransf_12
N6_N4_Mtase
Methyltransf_32
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
CCC83775
LinkDB
All DBs
Position
997404..999017
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AA seq
537 aa
AA seq
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MLRAGTENKNGNTDDFPRKKGENERKPRRFSKNERSNDGRSQEASNRKRSSAERSDLPVQ
KNDEAVIDIIGMNHDGEGVGRVEGFTLFVPGALPGEKVRVKVLKTKKQYGYAKLLDIAQA
SPDRIAAPCAIYDQCGGCQLQHMSYEAQLGWKRQHVVDVLERIGKLSVTTESSERTAEVL
ADSADGNADHMSRVQGVVVHPTLGMSEPWRYRNKAQVPIGVAEGGLVGGFYARGSHRIVD
MNTCLIQDERNDEVVARVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLVTN
GRDIPHADAWIGSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFA
ISARSFYQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQVYGVEIV
KEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKEQGITADVIVVDPPRKGCDPRLLDTI
LEMKPERVVYVSCNPSTLARDLRILEDGGYSTVEVQPVDMFPHTVHVESVALLVRKD
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgggctggaaccgaaaataaaaatggaaatacggacgattttcctcggaaaaaa
ggggagaatgaacgaaaacctcgtcgtttttccaaaaatgaacggagtaacgacggacgg
agtcaggaagcttccaatcgtaaacggtctagtgcagagcgtagcgatctgcctgtgcaa
aagaacgatgaggccgtgatagacatcatcggcatgaaccatgatggcgagggtgtaggg
cgtgtcgaagggtttacgctgtttgttccaggcgcgttaccgggtgaaaaggtacgggtc
aaggtgctgaaaacgaaaaagcagtacggctatgccaagctgctggatattgcgcaggct
agccccgaccgaattgcagctccgtgtgccatctatgatcaatgcggcggttgtcagctc
cagcatatgagctacgaagcgcagctgggctggaagcggcaacatgtggtggatgtgctg
gagcgtataggaaagctgagtgtgactacggagtccagtgagcgtactgcagaggttttg
gctgactctgcggatggaaatgcagaccacatgtcgcgtgtacaaggcgtagttgtgcat
cctacactcggtatgagtgagccgtggcggtaccgcaacaaagcacaggtgccgattggt
gtcgccgagggcgggcttgtcggcggtttctacgcacgtggcagccatcgcattgtggat
atgaacacctgtctcattcaggacgagcgcaatgacgaagtggttgcacgtgtcaaagag
attggccgaatgctgggcatcagtgcatataatgaagaaaccggacgcggactgttgcgc
catgtcgtggtgaagaccgcttttcgcacaggtgaaatgatgctggtgctcgtcacgaat
ggacgagatattccgcacgcagatgcgtggatcggcagtattcgtgagcatatcccacac
gtggcaagtatatgccagaacgtgaatacgaagcgaacgaacgttatttttggcgacgag
actcgtgtactgtgggggcgtgacgtgatctacgattacattggaaacgtccagtttgca
atttccgcacgatccttttatcaggtgaatcccgtacaaacggaagtactgtatagtaaa
accgttgagtatgctggactcacgggcaaagaaacggttattgatgcgtattgcggcatc
ggtacgatttctctgttcctcgctcagcatgcggaccaggtgtatggggtcgagatcgtc
aaagaagccatcgacgatgcacggagtaatgcgctattgaatgaaatgcgtaatgtgaag
tttgaggtaggcgcatccgaagatgtcattcctgcatggaaagaacaaggcatcaccgcc
gacgttatcgtcgtcgatccaccccgcaagggctgtgatccacgcctgctcgacaccatt
ctggagatgaagccagaacgcgtggtgtatgtatcctgtaacccaagcacactggcgcgg
gatttaaggatactggaggatggcgggtacagtacagtggaagtacagcctgtagatatg
ttcccgcatacggttcatgtggaaagtgttgctctgttggtcagaaaagactaa
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