Paenibacillus polymyxa M1: PPM_1369
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Entry
PPM_1369 CDS
T01968
Symbol
yjbO
Name
(GenBank) pseudouridine synthase, RluD
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppo03009
]
PPM_1369 (yjbO)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
PPM_1369 (yjbO)
Ribosome biogenesis [BR:
ppo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPM_1369 (yjbO)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
RluD_N
CooT
Motif
Other DBs
NCBI-ProteinID:
CCC84306
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All DBs
Position
1639394..1640353
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AA seq
319 aa
AA seq
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MSLYYEPIVYMIPPEEEGMLLKTILQKRMNISRKLISKLKLTEQGIMLNGIRVYISVKVK
SGDRVEIRMERERSDDILPEPIPFEILFEDEHLLVVNKAAGMVVHPTHGHYTGTLANGVV
HYWQAKGELFRFRPVHRLDQETTGVLVVAKNPYVHQHISEQMIAGTVDKRYTALVHGRPQ
QQEGRVDGPIDRNPDNPHLRMVTPDGYPALTLYKLEEVWSGGSRIGLKLESGRTHQIRVH
MTYIGCPLIGDKMYRITPNDAVQRELYDQLDARMPRQALHASELSLVHPVTGERMTFYAP
LPDDMIRMQELLRAQYHPE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtactatgaacctatcgtatatatgattcctcctgaggaggagggcatgttg
ttgaagaccattctccaaaaacgtatgaacatttctcgtaagctcatatccaaactcaag
ctgaccgaacaggggattatgctgaacgggatacgtgtgtatatcagcgtaaaggtaaag
tccggggatcgagtagagattcgcatggaacgcgagcgttccgacgatattttacccgaa
cccattccttttgagattttgtttgaggatgaacatctgttagtagtgaacaaggcggcg
ggcatggttgtccatccgactcatggtcactacacagggacgctggctaacggggttgtg
cattattggcaggccaagggggagctgtttcggtttcgtcctgttcatcgtcttgatcag
gagacgacgggcgtgctagttgtagctaaaaatccgtatgttcaccagcatatttccgaa
cagatgattgcgggaacggtggacaagcgctatacagctttggtgcatggacgccctcag
cagcaggaaggcagggtggacggaccgattgaccgcaacccggataatccgcatttgcgc
atggtgaccccggatggttatcctgctcttacgctatataagctggaggaagtgtggagc
ggaggaagccgcatcggtttaaaattggaatctggacgtacgcaccaaattcgggtgcac
atgacatatatcggatgcccgttgatcggagataaaatgtaccggattacacctaatgac
gctgtgcagcgtgagctctatgatcagcttgatgcgaggatgcctcgacaagccctgcat
gcttcggaattgtccttggtacatcctgtgaccggggagcggatgacgttttacgctcct
ctgccggacgatatgatcagaatgcaagagctgttaagagctcaatatcatccagaataa
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