Paenibacillus polymyxa M1: PPM_1912
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Entry
PPM_1912 CDS
T01968
Symbol
sigD
Name
(GenBank) RNA polymerase sigma factor rpoD Sigma-70
KO
K02405
RNA polymerase sigma factor FliA
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo02020
Two-component system
ppo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPM_1912 (sigD)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PPM_1912 (sigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppo03021
]
PPM_1912 (sigD)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ppo02035
]
PPM_1912 (sigD)
Transcription machinery [BR:
ppo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPM_1912 (sigD)
Bacterial motility proteins [BR:
ppo02035
]
Flagellar system
Flagellar assembly proteins
Stator
PPM_1912 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
PhyR_sigma-like
HTH_38
HTH_23
Sigma70_ECF
CtpB_N-like
DUF3793
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
CCC84849
LinkDB
All DBs
Position
2191616..2192404
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AA seq
262 aa
AA seq
DB search
MNERKAAHLNHSDLWEQWKEYGDKEAKKQLIEKYLHIVEYVSGRLAVGLPKNVSKDDLAS
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKKIEDAYQH
LEQRYLRTVSDEEMSHYLDVSEKEFQSMIQEVAVMSIVSLEDPIREEESETRLSLLVDEK
AKNPDHKVNEFTLRDALAQGIDKLTEKERIVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRATLDKQRDLLMRKD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagcgaaaagccgctcatttgaaccattccgacctgtgggagcaatggaaagaa
tacggtgacaaggaagcgaagaaacagttaattgaaaagtatcttcatattgtggagtat
gtgtcgggccgtcttgcagtaggcttacctaaaaatgtatccaaggatgatctggcgagc
aacggtgttatgggtttgattgatgctttagagaaatttgattatgagcgtggtttgcag
tttgagacgtatgcttcttggcgtgttcgtggagcaattttggatggccttcgtcaagga
gattgggttcctcgttcagttagggaaaaagcgaaaaaaatcgaagacgcctaccaacat
ctagaacaaagatatttacgcacagtaagcgacgaagagatgagtcattatttggacgtc
tccgagaaagagtttcaaagtatgatccaggaggtcgccgtgatgtcgattgtttcactg
gaggacccgatccgcgaagaagagtcggaaacacggctttccctgttggtggacgaaaag
gcgaaaaatccggaccataaggtcaatgaattcacacttcgtgatgccttggcacaaggc
attgataaattaactgaaaaagagcgtatcgttgtttctttattgtattacgaggatctg
tcactcagcgaaattgctgaggtcatgtcactttctccttcgcgaatttctcagttgcat
tccaaagcaatattacgtctgagagcgacactggacaaacaacgggatttgctaatgcgt
aaagattaa
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