Paenibacillus polymyxa M1: PPM_1935
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Entry
PPM_1935 CDS
T01968
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppo03016
]
PPM_1935 (truB)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PPM_1935 (truB)
Transfer RNA biogenesis [BR:
ppo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PPM_1935 (truB)
Prokaryotic type
PPM_1935 (truB)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
SCO6045_C
Motif
Other DBs
NCBI-ProteinID:
CCC84872
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All DBs
Position
2216806..2217744
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AA seq
312 aa
AA seq
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MNPIKKEQATWEGVLPVYKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLG
RATRVVEYMQERPKEYRATLRLGIATDTEDLTGTITEESERPVEVTEMEAKAVLERFVGT
ISQVPPMYSALKVDGKRLYELAREGKTVERKSREVSIYELEMTGFAKMGAHVDISFRALC
SKGTYIRTLCVDIGRELGYPSTMVKLERTMSAGISAEHCLTFEEIERYVADGSLGERLIA
TDKAIDYMPEHTVAESKAAAALQGQRLSLSMISPPVTDNQPFRLYKEDKTFLGIYGRDES
GAIAPIKVFLSL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaataaagaaggaacaggcaacttgggaaggtgttctacctgtttataaacct
gctggatttacctctcatgatgtggtggccaaggctcgccgtttattggggatgaagcga
ataggacatactgggacactagatccgcaggtaaccggtgttctgcccttgtgtctggga
cgcgctacccgagtggtggagtacatgcaagagcgacccaaggaataccgggctacactg
cgcttaggcattgccactgataccgaagacctgactgggacaataacagaagagagcgaa
cgtccggttgaggtgaccgaaatggaagccaaagcggttttggagcgtttcgttggtacg
atctcccaagtcccacccatgtactctgccctcaaagtagatggaaaacgtctatacgag
ctggctcgagagggcaaaaccgtggagcgtaaaagtcgtgaagtgagcatttacgagctg
gaaatgacgggatttgcgaagatgggggcgcatgtggatatttcttttcgtgctttatgc
tccaaaggtacttacatccgtacactatgtgttgatattggccgtgaattgggatatcct
tcaacaatggttaagctggagcgaaccatgtctgcgggaatttctgcagaacattgttta
acatttgaagaaattgagcgctatgtagccgatggtagcctaggtgagcggcttatcgcc
accgataaagcaattgactatatgcctgagcatacagtggctgaatccaaggcagctgcg
gctctgcaaggccaacgcctgtcgctgagtatgatttcaccaccagtgacagacaaccag
cctttccgattatataaagaggataaaacgtttttaggcatatatggacgggatgaatca
ggtgcgatcgctccaattaaagtttttttaagtttgtag
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