Paenibacillus polymyxa M1: PPM_2745
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Entry
PPM_2745 CDS
T01968
Symbol
ycdD1
Name
(GenBank) L-alanyl-D-glutamate peptidase
KO
K17733
peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppo01002
]
PPM_2745 (ycdD1)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppo01011
]
PPM_2745 (ycdD1)
Peptidases and inhibitors [BR:
ppo01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
PPM_2745 (ycdD1)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppo01011
]
Peptidoglycan biosynthesis and degradation
Endopeptidase
PPM_2745 (ycdD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M15_4
VanY
DUF6576
FlxA
PspB
Motif
Other DBs
NCBI-ProteinID:
CCC85682
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All DBs
Position
complement(3212801..3213574)
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AA seq
257 aa
AA seq
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MTITLELVKSKSATRLQGLLPVVRTAAECLIERSFALGIPIVITQGLRTIAEQNELYAQG
RTKPGPKVTNAKGGTSYHNFGVAIDFSLLLPDGRSVSWDTQRDGNADHKADWMQVVAIAK
ELGFEWGGDWKTFTDLPHLQIVFGLSTAQYRAGKRPTKAQIDSVLSRINKTGDDEPMTLE
EKATLKELQKTVQAQADRIKTLETAAKQPKVPTWAEQACINAKAVGVLDTANDGSYDFYR
MVTMLDRAGIFETKGDK
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
gtgacaataacactggagttggtaaagagtaaatctgcaacgcgtttacagggactttta
cctgtcgtccgcacagccgcggagtgccttatagagcgttcctttgctttaggtatacct
atcgtaatcacacaggggctacggaccatagcggagcaaaatgagctttacgcacaggga
cggaccaagccgggaccaaaagtaacaaacgccaaaggcgggaccagctatcacaatttt
ggtgtggctattgatttttccttactgctgcctgacggacggtctgtaagctgggatact
caaagagatggtaatgcagaccataaagcggactggatgcaggttgtggctattgctaag
gagctgggctttgagtggggaggcgattggaaaacgttcaccgacttgccgcatctacaa
atagtatttggcctgagcacagcacagtatcgagcaggtaagcggcctacgaaggcacag
attgattcagttttatccaggattaacaaaacaggagatgatgaacccatgacactagaa
gaaaaagcaacgttgaaggaactacaaaaaacagtgcaggcgcaggctgaccgcatcaag
acactggagacagcggccaaacagcccaaagtacccacgtgggctgaacaagcctgcatc
aacgccaaggccgtaggtgttctagatacagctaatgatggatcttatgacttttaccgc
atggtcacgatgcttgatcgagcagggatttttgaaacgaaaggggataaataa
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