Paenibacillus polymyxa M1: PPM_2945
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Entry
PPM_2945 CDS
T01968
Symbol
hup
Name
(GenBank) integration host factor subunit alpha IHF-alpha
KO
K03530
DNA-binding protein HU-beta
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppo03032
]
PPM_2945 (hup)
03036 Chromosome and associated proteins [BR:
ppo03036
]
PPM_2945 (hup)
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_2945 (hup)
DNA replication proteins [BR:
ppo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PPM_2945 (hup)
Chromosome and associated proteins [BR:
ppo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PPM_2945 (hup)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PPM_2945 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-DNA_bdg
DUF2267
SIS_2
DUF937
Motif
Other DBs
NCBI-ProteinID:
CCC85882
LinkDB
All DBs
Position
complement(3418387..3418659)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG
RNPQTGEEIEIPASKIPAFKPGKALKDGIK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaaacggatttgatcaatcaggtttctgagagcactgaattgtccaaaaaggac
gtaaccaaagcaatcgatgcagtatttgaggcgatcgctggtgcactgcaaaacggagac
aaggtacaactggtaggtttcgggaactttgaggttcgtgaacgttccgcacgtaaagga
cgtaacccgcaaacaggagaagaaatcgaaatccctgcgagcaaaattccggcattcaaa
ccgggtaaagcgctcaaagacggaattaaataa
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