Paenibacillus polymyxa M1: PPM_3335
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Entry
PPM_3335 CDS
T01968
Symbol
rluD3
Name
(GenBank) ribosomal large subunit pseudouridine synthase D
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppo03009
]
PPM_3335 (rluD3)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
PPM_3335 (rluD3)
Ribosome biogenesis [BR:
ppo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPM_3335 (rluD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
ThiS-like
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-ProteinID:
CCI70144
LinkDB
All DBs
Position
complement(3868315..3869319)
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AA seq
334 aa
AA seq
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MAMIALKGSHSMNEVNENGEAIGLSYEDELEGESLEWTADSGNVKTRIDKYIAEEMKEVS
RSQIQLWIGNGRVLVNGTAVKANYKLAEGDHIVLSVPEPESVDIMPENIPLDVVYEDSDV
IVINKQRGLVVHPAPGHSSGTLVNALMYHCHDLSGINGELRPGIVHRIDKDTSGLLMAAK
NDQAHASLAAQLKDHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDRKMFTVTERNSKHA
VTHFLVIERLGDYTLLELQLETGRTHQIRVHMKFIGHPLVGDPMYGRSKGVRMEGQALHA
AVLGFKHPTTGEYLEFSRPIPPDMEDVLTSLRSR
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgatagcgttgaagggaagtcatagcatgaacgaagtgaatgaaaatggcgaa
gccataggtctgtcttatgaggacgaactggagggtgaatctctggaatggacggcagat
tcagggaatgtcaaaacacgtatagacaaatacatcgccgaagaaatgaaggaagtatct
cgttctcaaattcagctgtggatcgggaatggtcgcgtactggtgaacggtacggcggtc
aaagcgaactacaagctggctgaaggagatcatattgtattatcggtacctgagccagaa
agtgtagatattatgccggaaaatattccgctagatgttgtatacgaggattcggacgtt
attgtcattaacaagcaacgtggtctagtggtgcatcctgcaccaggacactcctcggga
acactggtcaacgcactgatgtaccactgccatgacctttccggcattaacggggaatta
cgtcccggtattgttcaccgtattgataaggatacatcaggactgctgatggcggctaaa
aatgatcaggcccacgcatcacttgcagcacagcttaaggatcatagcgtgactcggaaa
tatattgcattggtccacggtcatttgagccacgatcagggaaccgtagatgctccgatc
ggtcgtgattcaggtgatcgtaaaatgttcacggtgacggaacgcaacagcaagcatgca
gttacccattttctcgttattgaacggttgggggattataccttgcttgaacttcaattg
gagacagggcgcacacatcaaattcgtgttcacatgaaattcattgggcatccattggtt
ggcgaccctatgtatggacgcagtaaaggggttcgtatggagggccaagccctgcatgca
gcggtattgggatttaagcatccaaccacaggagaatacttggaatttagcagaccgatc
cctcctgatatggaggacgtattaacgtccttgcgtagtcgctaa
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