Paenibacillus polymyxa M1: PPM_3416
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Entry
PPM_3416 CDS
T01968
Symbol
sbcD
Name
(GenBank) Nuclease sbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_3416 (sbcD)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPM_3416 (sbcD)
Archaeal homologous recombinant proteins
PPM_3416 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
Metallophos_3
Motif
Other DBs
NCBI-ProteinID:
CCI70225
LinkDB
All DBs
Position
complement(3962807..3963991)
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AA seq
394 aa
AA seq
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MRILHTGDWHLGRTLEGRSRLKEQEAFLEELVKMADDQQADLIMMAGDVYDSVNPSAAAE
QLFYEASARLTAGGRPLVVIAGNHDQPERVASVTPLVSGRGITLLGLPHGEAVHVRTPRT
GEMACIAALPYPSESRLNELLSEDGDETILREAYSRRVGMLMSQLGTAFQPDTVNLSMSH
IYVLGGLESDSERPIQVGGAYTVDPSALSIGAQYTALGHLHRPQYVKGDGLMRYSGSPLA
YSFSEAGQAKSVTLIDVIAGKPAQVEELYITSGRPLVRWRARGGLEEVYRWLDEGLDADA
FIDLEITLDEAMSMGDIQRLRKSREGIIHIRPVYPEMAAAQLEQQRSELPVHELFRAFYQ
RQTGGAQPDDGLVQLFLELVEQDDARDQAEEDEV
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcggattttgcatacaggtgattggcatttgggtcgcacgttggaagggcgaagccgc
ctgaaggagcaggaggcgtttttggaagaattagtgaaaatggctgacgaccagcaggct
gatttgattatgatggctggagatgtgtacgactcagtcaatccttcggccgccgcagag
caattgttttatgaagcatctgcgcgtcttacggctggaggaagaccgctcgtcgtcatt
gccggcaatcatgatcagccggaaagggtagcctcggtcaccccgctggtgagcgggcgt
ggaattacattgctgggactgcctcatggggaagcagtacacgttcgtacaccgcgaacg
ggcgaaatggcatgtattgcggccttgccttatccctccgagtctcgtctgaatgagcta
ttgtctgaagacggggatgaaaccatactacgcgaggcatatagccgccgtgtaggaatg
ctgatgtcgcagctaggtacagcgtttcagcccgatactgttaatttgtcgatgagccat
atttatgtgcttggcgggctggagtcggattcggaacgcccgattcaggtcgggggagct
tataccgtagatccgtctgctttgagcattggagcgcagtatacggctctgggtcatttg
catcgtccccaatatgtgaagggcgatgggctgatgcgttatagtggctctccgctggct
tatagcttttccgaagctggacaagccaaatcggttacgttaattgacgtgattgccggc
aagccagcacaggttgaggaattgtatattaccagtggacgcccattagtgaggtggcga
gcacggggaggtctggaagaggtatatcgctggctggacgaaggactggatgctgatgcc
tttattgacctggaaattacgctggatgaagcgatgtcaatgggagatattcaacggttg
cgcaaaagccgtgaaggcatcattcatattcgccccgtgtacccagaaatggctgcggca
cagttggaacagcaacgttcagaactgccggttcatgagctgttccgggcgttttaccaa
cgacagacgggcggagcacagccggatgacggattagtacagttgtttctggaattggta
gaacaggatgatgcaagagaccaagctgaggaggatgaggtatga
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