Paenibacillus polymyxa M1: PPM_3417
Help
Entry
PPM_3417 CDS
T01968
Symbol
addA
Name
(GenBank) ATP-dependent nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_3417 (addA)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPM_3417 (addA)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PPM_3417 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_16
AAA_30
DUF2249
DUF5956
AAA_12
Motif
Other DBs
NCBI-ProteinID:
CCI70226
LinkDB
All DBs
Position
complement(3964022..3968041)
Genome browser
AA seq
1339 aa
AA seq
DB search
MIGTSNAKGLPKPEGSMWSDDQWRAISESGNNMLVAAAAGSGKTAVLVERIIRKIVDPRL
GFSVDRLLVATFTKAAAAEMRQRIREALERVLEQEPESEHVRRQLSLLNRASITTLHSFC
MEVIRRHYQAIPLDPGFRIMNEHETELLRQELLEELFEEKYEAHDEGSTFRRLVDWFSGE
RTDDAMYVLVQRLYDFSQSHPWPEHWLRETAAAFRVQDVAALGETPWVRSILADAALSLR
GAASLLEQAHETAIQAGGPAPYAMTLQEDAAMVKELLQELETQPWASLYDHFQAASFGKL
KPVKKDQTEPALQERVKTLREAAKKMITDMKASLFGRRAEAYLEELHATAPLMDELVETV
IAFGERFQQHKQSKGLVDFGDLEHYCLKILRHPDSTPYKLLPSDAALEYKAQFDEVLLDE
YQDTNTVQEDIVRLVSREEPGNRFMVGDVKQSIYRFRLAEPGLFLNKYQRYGMQEQEDGF
LIDLARNFRSREEVVDAVNLVFRQIMSVDVAEIEYDERAWLVHGASYPEKTEQEAASAYA
PELLLVDKGGRGLSETLELPEMGDESALQESELAELAELETAQLEARAIAQRIKELTGDT
GQPLLIYDRGLKAMRPAVYGDIVILLRSASVWAPLIVEELRLEGIPASGEQTTGFFKATE
VEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTEDELAQIRLEKPDGLFYDALLAAAETEQ
VDQSVKGTSADVLEMDLFTEDSLSPPHSVHRDDGNTLSARLRSFLRNLDAWRQEARQGSL
SALIWNVLEETGYLDWVGGLPGGSQRQSNLRALYDRARQYETSTSNRGLFRFLTFISRLR
ERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFPVVFIAGTAKMFNQQDLNAPFLMHKELG
FGPKYVEEQNRVSYPTLPNLAIRRRSQLELLAEEMRVLYVALTRPREKLIMTGTVKDLAS
RAAGWARAKEHTETVLPDYILAAGRSYLDWVGPALIRHPSATSLRKAAGDQEGDYHRLEH
MPGADWLFKIVASETLSGSRVNSDREEEVSAEERQKKTEALRNVELIELDEESETDIAAA
LSWTYPYERAGKTAANTSVTEMKRWLEMQEIGSDDWLNLSSISQQADLPEDCENSDTGGS
QLHLRRPKFMGNQRLTPTERGTVYHTLMLHLPLDGVMSAEIIEETKARLLNQRILLDVHA
EALDTDKILRFFSSELGSRMLRSSRIQRELPFTYTMRATDYWNHSLPVMLPEQKTVTEGG
QDDKVLMNGIIDCLFETPEGLVLLDYKTDRVSEYRTLSHLTDQYRFQLELYARVIEEITG
NKVAEKWLYFIEAEESVRL
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgataggcacgtcaaacgctaaaggcttgccgaagccggaaggaagtatgtggagtgat
gatcagtggcgtgccatttcggagtctggtaacaacatgctggtcgcggcagcggcgggt
tctggtaaaacagcagtgctggtagagcgtattattcgcaaaattgtcgatccccggctc
ggcttcagtgtggatcggttactagtggcgacctttacgaaggctgcagccgctgaaatg
cgtcaacggatacgcgaagccctggaacgtgtgctggaacaggaaccggaaagtgaacat
gtgcgccgacagctatcgttgttgaatcgcgcctcaattacgacacttcactctttttgt
atggaggtcatccgcaggcattatcaggccattcctcttgatcccggctttcggattatg
aatgagcatgaaacagaattgctgcgccaagaactattagaagaactgtttgaggagaaa
tatgaggcccatgatgaaggcagcacattccgcagactggtcgactggtttagtggagaa
cgcaccgatgatgccatgtatgtgcttgttcagcggttgtatgatttttcgcaaagtcat
ccttggccggagcattggctgcgggagacggcagcagcatttcgtgtacaggatgtagct
gcgttgggggagactccctgggttcgcagtattttggcggatgctgcactttcgttgcgc
ggagccgcgagtttgctggaacaggcgcatgaaacagctatacaggctggcggtcctgca
ccctatgccatgacgctgcaagaagatgcggcgatggtgaaggaattgctgcaggagctg
gagacacagccgtgggcatccttgtatgatcattttcaggcagcgtcctttggtaagctc
aagccagtcaaaaaagatcaaaccgagcctgcattgcaggaacgggttaagacgctacgc
gaggctgctaagaaaatgattacagatatgaaggcttccctgttcggtaggagagcagaa
gcttatttggaggaactgcatgcgacggctcctctgatggacgaactggtggagaccgtg
attgctttcggggaacgatttcaacagcacaagcagtcaaaaggactggtggatttcggg
gatttggagcattattgtctcaaaatattaagacatcccgactccactccgtacaagctg
ctcccttccgatgctgcacttgaatacaaggcacagttcgacgaggtgttgctggatgag
tatcaagatacgaataccgtacaggaagatatcgttagactggtatcacgcgaggaaccg
ggtaaccgttttatggtgggagacgtgaaacagagtatttatcggtttcgactggccgag
ccagggctgtttttgaataagtatcaacggtacggtatgcaggagcaggaagatggcttt
ttgattgatctggcgcgtaattttcgcagtcgggaggaagttgtcgatgcggttaatttg
gtgttccgccagattatgagtgtggatgtagcggaaattgaatacgatgaacgagcatgg
ctggtgcacggcgcgtcctatcccgagaagacagagcaggaagctgcgtctgcatacgca
cctgagctgctgttagttgataaaggtggacgtggtctttccgagactttggagctacct
gaaatgggggacgaatcggctttacaggaaagtgagctggccgagcttgcggagctcgaa
acggcacagttggaggctcgtgcgatcgcgcaacggattaaggagctgactggagatact
ggacaaccactgttgatttacgataggggattaaaagcgatgcgtccagcagtctacggt
gatattgtcattttgcttcgttcagcaagcgtatgggctcccttaattgtcgaggaactg
cggcttgagggcattccagcctctggagagcagacgacaggcttttttaaggcaacggaa
gttgaagtgatgttgtccctcctgcacattattgataatccgcagcaggacatcccgctt
gcatccgtgcttcgttcgccaattgtcggcttgaccgaagatgaactggcacaaattcgg
ctagagaagccggatggattattttatgatgcattgctggcggcagcagagactgaacaa
gtcgatcagagcgtaaaagggacctctgctgacgtattggagatggatcttttcactgag
gactcgctatctccaccccactctgtccatagggacgacggcaatacgttgtctgcccga
ctacgctcatttttgcgtaatttggacgcatggcggcaggaagccagacaaggcagctta
agtgcattgatttggaatgtgctggaggaaacaggatatctagattgggtgggtggattg
cctggcggctcacagcgtcaaagcaacctacgggccttatatgaccgagcgagacagtat
gagacttctacgtccaaccgtggcttgttccgattcctgacctttatttcccgtctgcgg
gagcggggcggtgatttaggatcgatcagtggggggactgaacccgatcaggctgtccgc
attatgaccattcataaaagtaaaggacttgaatttcctgttgtgtttattgcggggacg
gcaaaaatgtttaatcagcaggatctgaatgcgccgtttctaatgcacaaggagttggga
tttggtcctaaatatgtggaggaacaaaaccgtgtcagctaccctacgctgcctaattta
gcgatccgtcgacgctcacagctggagctgttggctgaagaaatgcgtgtgctatacgta
gcgcttacgcgtccgcgtgaaaagctgattatgaccggaaccgtgaaggatctcgcttcc
cgcgcagcgggttgggcgcgtgccaaggagcatacggaaacagtattaccagactatata
ctggcggcaggtcgcagctatctggactgggtaggtcctgcattgattcggcatccttct
gcaacttcgctgaggaaagcggcaggggatcaggagggggactatcacagactggaacac
atgccgggggcagattggttatttaaaatcgtagcctcagaaacactttctggctctcgt
gtgaactcggatcgtgaagaagaggtatcggccgaagaacgccaaaagaaaactgaagca
ctgagaaatgttgagctaatcgaattagacgaagaaagtgaaacggatattgctgcggct
ctttcttggacctacccgtatgaacgggcgggcaagacagcagccaatacatcggtcaca
gagatgaaaagatggctggagatgcaggagattggatcggacgattggctgaatctatct
tctatctcccaacaagcagacttaccagaagattgtgaaaattctgacactgggggcagt
caattacacttgcgcagacctaagtttatggggaatcagcgactgactcctacggaacga
ggaacggtctatcatacgttgatgctgcatctgcccttagatggagtaatgagcgctgaa
attattgaggaaacaaaggctcgtttgctgaatcaacgcattttactggatgttcatgca
gaggcgctggatacggataaaatattaagatttttctcaagtgagctggggagcagaatg
ttgcgttcatcccgtattcagcgtgagcttccgtttacttataccatgcgggcaaccgat
tactggaatcacagtttacctgtgatgctgccagaacagaagacagttacggaaggcggg
caggacgataaagtgctgatgaacgggatcattgattgtctgttcgaaactcccgaagga
ctggtgctgctggattataaaacagaccgggtctccgaatatcgtacgctgtcacattta
acggaccaatatcgttttcaattggagctgtatgcccgtgtgattgaagagattacaggc
aataaggttgctgagaaatggttgtattttatagaagctgaagagagtgtgcggttgtag
DBGET
integrated database retrieval system
