Paenibacillus polymyxa M1: PPM_3879
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Entry
PPM_3879 CDS
T01968
Symbol
cafA
Name
(GenBank) putative ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppo03019
]
PPM_3879 (cafA)
03009 Ribosome biogenesis [BR:
ppo03009
]
PPM_3879 (cafA)
Messenger RNA biogenesis [BR:
ppo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPM_3879 (cafA)
Ribosome biogenesis [BR:
ppo03009
]
Prokaryotic type
rRNA processing factors
PPM_3879 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
CCI70688
LinkDB
All DBs
Position
complement(4489165..4490349)
Genome browser
AA seq
394 aa
AA seq
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MKQMIVQCQQQMTQMALLEEGRLVEYAAELPRKRGILGSFFKARVVNVLPGMQAAFVDIG
QRKNAFLYVDDVLHAHLDKQPEVKPSISELLKVGQEIVVQVLKEAVGSKGARVTTHFSLP
GRWIVYMPRADYVAVSKKIEREGERARLKAMGEQLRTGEEGVIIRTVSEEMSIEAIENDL
NQLRKQWAAIQRKAGEHSAPCELHRDLSIVQRLIRDVFTPEQDELVIDSEEQAKDAEVML
QQIGSAKAHVSIFRSAEETIFKAYGIHEQLERDFARKVWLQGGGYIVIDHTEALTVVDVN
TGKFTGGSNLEETVTQTNIEAAEEIARLVRVRDIGGIIIIDFIDMEQEENRREVSSVLEA
RLKKDRTKSYVVGWTRLGLLEMTRKKVREEKTLV
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaatgattgtacaatgccaacagcagatgacccaaatggcactgttggaagag
ggacgattggttgaatatgcggctgaactaccgcgaaaacggggaattctaggttctttt
ttcaaagcgagggtggtcaatgtgctaccaggaatgcaagccgcctttgttgacattgga
cagcgcaagaatgcctttttgtatgtggatgacgtacttcatgctcatttggacaagcag
ccagaggtaaagccgtccatttctgaactgttaaaggtggggcaggaaatcgtagtacag
gtattaaaagaggcagttggtagcaaaggagccagggtgaccactcatttttcacttccg
ggccgctggattgtttacatgccccgtgctgattatgtggccgtatccaagaagattgag
cgtgagggagaacgtgcccgtttgaaagccatgggagagcaactgcgcacgggtgaggaa
ggggtcatcattcgtacggtttcagaggaaatgagtatagaggcgattgaaaatgatctg
aatcaactacgtaagcaatgggcggctattcagcgcaaagcgggtgaacactccgcaccg
tgtgaattgcaccgagatctgagtatcgttcagcgtttaattcgcgatgtgtttacacct
gagcaggatgaactggtcattgacagtgaggagcaagcaaaggatgcagaagtaatgctg
cagcagattggttctgcgaaagctcatgtaagtatatttcgcagtgcagaagaaacgatt
ttcaaagcttatggcattcatgagcagctggagcgcgattttgcacgaaaggtatggctt
cagggtggcggatacattgtcattgatcatacggaggcattgaccgtcgttgatgtgaac
actgggaagtttacgggcggcagtaatctggaagagacggtgacccagactaacattgaa
gcagcagaagagattgcccgcctggtacgtgtacgtgatattggaggtattatcatcatt
gatttcatcgatatggaacaagaggagaatcgtagggaagtatcttctgtgctggaggca
agattaaaaaaggaccggactaaatcatatgttgtcggttggacgcggttaggtttactg
gaaatgacccgcaaaaaagtgcgtgaagaaaagactctcgtgtag
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