Paenibacillus polymyxa M1: PPM_4229
Help
Entry
PPM_4229 CDS
T01968
Symbol
sigB
Name
(GenBank) RNA polymerase sigma factor rpoD Sigma-A
KO
K03090
RNA polymerase sigma-B factor
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppo03021
]
PPM_4229 (sigB)
Transcription machinery [BR:
ppo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPM_4229 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
Sigma70_ECF
HTH_38
HTH_Tnp_ISL3
GerE
HTH_50
KORA
Cyclophil_like2
HTH_29
HTH_28
TnsD
Lyase_1
DUF1492
HTH_10
MarR_2
HTH_24
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
CCI71038
LinkDB
All DBs
Position
complement(4868420..4869193)
Genome browser
AA seq
257 aa
AA seq
DB search
MNEKVTPPESMDEAVGLIWEYQQTKDNEIATVLIRKYEPMVKMAAGKISRNRPDLYEDLY
QTGQMALIRLLQQYDISLGIPFEPYAMKSMLGHMKNYLRDKSWYIQVPRRIKEKGALVQH
AIDELTVKLERSPNVNEIAEYLDLTVEETIEVLAGRECYHYVSLDSPLSQEESAATLGEL
ISSDANDFDTVEKRMDLQQALSQLKEQEQKVLLLAFQDGQSQRAIAQTLGVSQMSVSRIQ
KRATEKLKQIMSNSSIS
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaaggtaactcccccggagtcgatggatgaagccgttggtctaatctgggag
taccagcaaaccaaagataacgaaattgctaccgtgctgatccgcaagtatgagcctatg
gtcaagatggctgccgggaagatatcccgtaaccgtccggacttatacgaggatttatat
cagaccggtcagatggctttgatacgtctgctccagcaatacgatatcagcttgggtatc
ccatttgagccgtacgctatgaaaagtatgctgggacatatgaaaaattatttgcgcgat
aaatcctggtacatacaggttcctcgtcgcatcaaggaaaagggtgcgcttgttcaacat
gccattgatgagctgaccgtcaaattagaacgctcacccaatgtgaacgagattgcggag
tatttggaccttaccgttgaggagacgatcgaggtgcttgctggccgtgagtgctaccac
tatgtttcactggactcgccattatctcaggaagagagtgcagctacgttaggtgagctt
attagctcagatgctaacgattttgacacggtggaaaaacggatggatcttcagcaggct
ttaagccaactgaaagagcaggaacagaaagtgcttcttctggcatttcaggacggtcaa
tctcaacgtgcgattgcacagacgttgggtgtatcacagatgagcgtttcccgtattcag
aagcgggcaacagaaaagttgaagcagattatgtctaattcctctatttcatga
DBGET
integrated database retrieval system
