Paenibacillus polymyxa M1: PPM_4424
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Entry
PPM_4424 CDS
T01968
Symbol
truA3
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ppo
Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppo03016
]
PPM_4424 (truA3)
Enzymes [BR:
ppo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
PPM_4424 (truA3)
Transfer RNA biogenesis [BR:
ppo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PPM_4424 (truA3)
Prokaryotic type
PPM_4424 (truA3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
CCI71231
LinkDB
All DBs
Position
complement(5142572..5143357)
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AA seq
261 aa
AA seq
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MRNLCMKVNYDGTHYDGFQTQPSGNTIQDCLENAIYSLTGERLKITGSGRTDAGVHAYGQ
VFNFHTESPIPIHRWCLALNAWLPRDIIVTDAREVPLSFHARRMAKRKTYRYSINANRFP
DIFHRRTQAHHPTNLDVRAMEKGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYITVDHS
FSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSPDDIPSILEAKNRSKAGP
TAVGHALTLWNVEYEENIKKH
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcggaacttgtgcatgaaggtgaactatgatggaacccactatgatggctttcagacg
cagcctagtggcaacactattcaggactgccttgaaaatgctatatactcattgacgggc
gaacgtctgaaaattacgggctcaggacggacagatgcaggtgtgcatgcatacgggcag
gtattcaattttcatactgaatcgccgattccgatacatcgctggtgtctggcacttaat
gcctggctgcctcgtgatatcatcgttacggatgcgagagaggtgccactgtcctttcat
gcacgccgcatggcgaagcggaagacgtatcggtacagtattaatgcgaaccggtttcca
gacatctttcaccgtcgtacacaggcccatcatccaacgaatctggatgtaagagcgatg
gaaaaggggttggctcatttagtgggcacctttgactatacttcgttcgcatctcgacgt
tcccaaaagacgaaccatgttcgcactatttacgaagcctatataacggtagaccattcc
ttttcgcgtcctgggtcggatgatcagggaattattcatacgtatattacaggtagcgga
tttttgcagcacatggttcggattataatggggactttgctggaagtgggagaaggcaaa
aaatcgccggatgatattccttccattttggaagcaaaaaaccgttcaaaggccggacct
actgccgttggacacgctttaacgctctggaatgtagagtacgaagaaaacatcaaaaaa
cattga
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