Paenibacillus polymyxa M1: PPM_4461
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Entry
PPM_4461 CDS
T01968
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppo
Paenibacillus polymyxa M1
Pathway
ppo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPM_4461 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppo03021
]
PPM_4461 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppo03400
]
PPM_4461 (rpoC)
Enzymes [BR:
ppo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPM_4461 (rpoC)
Transcription machinery [BR:
ppo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPM_4461 (rpoC)
DNA repair and recombination proteins [BR:
ppo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPM_4461 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CCI71268
LinkDB
All DBs
Position
complement(5163884..5167498)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNQPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEEGSNMILRNPNEAISAYQRGTAGLHARVAIP
VKALNKTSFTEKQQDAMLITTVGKIIFNEIFPASFPYINDATRANLLYGTAEEFFVYEKG
VNLTEAIQNAPQAGGVGKDYLGNIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGVTVA
VADVVVPQEKQDILKASDDKAQVVTNQYRRGLITNEERYDRIIDIWSKAKDDITDILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRLEGRYCFETVRHPETGEILARRNELIDSNKAEAIVKAGVDKVQIRSVLSCRAKHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEVREGKDRREIDIQGEAETKTYSVTYGSRLRVSEGMTVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGDTTLLPGSFVDVHEYENANKIAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFAQPEEGQSSSEELEP
ISAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaatttcgaatatatgaaaatcgggcttgcttcccccgaaaagatt
cgttcttggtcccgcggagaagtcaaaaaaccggagacgattaactatcgtacgcttaaa
ccggaaaaagaaggactattttgcgagaaaattttcggacctacgaaagattgggaatgt
cactgtggtaagtacaaacgtgtacgctataaaggtgttgtctgtgaccgctgtggagta
gaagttactcgcgctaaggttcgccgtgagcgtatgggccacattgagttggctgctcct
gtatcgcacatttggtacttcaaaggcattccgagtcgtatgggtcttgctcttgatatg
tctccaagatctttggaagagatcatttacttcgcatcttatgttgtaaccgatccagga
gatacgcctttggagaaaaagcaactcctgtccgagaaagaataccgcagctaccgtgag
aaatatggctacggattccaggcgggaatgggtgctgaagcggttaaaaagcttcttcaa
gatttagatatagacaaagaattggaattcttgaaagaagagctacgtacggctcaaggg
caacgtcgaaaccgtgcgatcaaacgccttgaagttattgaggcattccgtaactctggt
aaccaaccggactggatgatcatggacgtactgcctgttattccccctgagcttcgtcca
atggtacagctggacggtggacgttttgctacttctgaccttaatgacctgtatcgtcgg
gttattaaccgtaataaccgtctgaaacgcttgttagatctgggtgcgccagatattatc
gtgcaaaatgaaaaacggatgttgcaggaagctgttgacgctctgattgataatggtcgt
cgtggtcgtcctgttacaggtccgggtaatcgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcaaaacttgctcgggaaacgtgttgactattccggt
cgttccgttatcgtagtaggcccgtacttgaagatgtaccaatgtggtctgccgaaagaa
atggcgctggagctgttcaagccttttgttatgaaagagcttgttaacaaaggtttggca
cacaacattaagagcgcgaagcgtaaagtagagcgtgtgagtgctgaagtgtgggatgta
ctcgaagaagtaatcaaggagcatccggttcttctaaaccgtgcccctacgctgcataga
ctaggtattcaagcgtttgaaccgatcttggttgaaggtcgtgcgattcgtttgcatccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccaaatggcggttcacgttccg
ctgtctgcagaggctcaagcggaagctcgtttgctcatgctggcatccggcaacattttg
aatccaaaagacggcaagcctgttgttactccttcccaggatatggtcctcggctcattc
tatttgactatggacaacaaggaagaagaaggaagtaacatgatccttcgcaacccgaat
gaggctatctcggcttaccaacgcggaacagcgggtcttcatgctcgtgtagctattccg
gttaaagctttgaataaaacgagctttacagagaagcagcaggatgcgatgttgattaca
accgtgggtaaaattatctttaatgagattttcccagcaagcttcccgtatatcaatgac
gctactcgtgccaacctgctctatggtactgctgaagagttctttgtttacgagaaaggt
gtaaatcttactgaagccatccagaacgctccgcaagctggtggagtgggcaaggattac
cttggtaatatcatcgcccgttgctttgaaatttaccatacgacagaaaccgccgtgatt
ttggataagatcaaacagcttggctttacgtattctactcgtgcaggtgtgacggttgct
gtggcagacgtagttgtacctcaagagaaacaggatattcttaaggcatctgatgataaa
gcacaagtcgtgaccaatcagtaccgtcgtggtctgattacgaacgaggaacgctatgac
cggattattgatatttggtctaaggctaaagacgatatcacagacattttgatgaaatcc
atggatcgctacaactctatcatgatgatggttgactctaaagcgcgtggtaacaaatca
cagattacccagcttggcggtatgcgtggactgatggcgaatccatctggtcgtattatc
gagctcccaatcaaatcgaacttccgtgaaggtctgacagtactcgagtactttatctcc
actcacggagcgcgtaaaggtttggcggatacagccttacgtacggctgactctggttac
ctaactcgtcgtctcgttgatgtggcgcaggatgttatcgtgcgcgaagatgactgcgga
acggataaaggctttacagtaagtcgcatccaggatggtaaagaagtcattgaggacctg
tacgatcgtctggaaggtcgctattgcttcgaaaccgtacgtcatcctgaaacgggtgaa
atcttggctagacgcaacgaactgattgactccaacaaagctgaagcgatcgttaaagct
ggtgtggataaagttcaaattcgttccgtactaagctgccgtgctaaacatggcgtctgc
aaaaaatgttacggccgtaatctggctactggcaagcacgttgagattggtgaagcggtt
ggtattatcgcggctcaatccatcggtgaaccagggacacagctcaccatgcgtacgttc
cacacaggtggtgtagcgggcgacgatatcacccaaggtttgcctcgtatccaggagctt
tttgaagcgcgtaatcctaaaggtcaggcaaccatcagtgaaattgacggtgtagttaaa
gaggttcgtgaagggaaagaccgtcgcgaaatcgacattcagggtgaagctgaaacaaaa
acctattcggtcacttatggttcacgtctgcgcgtaagcgaaggcatgactgtggaagcc
ggggacgaactgacggatggttcgattgaccctaaagaaatgctgcgtattaaaggtatt
cgcggggtgcagaactatatccttcaggaagttcaacgtgtataccggaatcagggtgta
gaaatcaacgacaagcacgtagaagttatgattcgtcaaatgttgcgtaaaattcgtatc
attgatgcgggcgacacgacactgcttccaggttcatttgttgatgtgcatgagtatgaa
aatgcaaacaagatagcgattctcagcggccaagaaccagcggtagccaaaccagttctt
cttggtatcaccaaggcgtctttggaaactgactccttcttgtcagcagcttccttccag
gaaactactcgtgtcctgacagatgcagctatcaaaggaaaagtcgatcagttgcttgga
ttgaaagagaatgtaattatcggtaaattgatccctgcgggaacaggtatgaaccgttac
cgtagcgtgaaatttgcccagcctgaagaggggcaatcctcatctgaggagctcgaaccc
atttcagctgagtag
DBGET
integrated database retrieval system
