Pectobacterium polaris: BJK05_03815
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Entry
BJK05_03815 CDS
T05195
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BJK05_03815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_03815
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BJK05_03815
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BJK05_03815
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BJK05_03815
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJK05_03815
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ASY79167
LinkDB
All DBs
Position
complement(878871..880298)
Genome browser
AA seq
475 aa
AA seq
DB search
MAEKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPE
AVMITGITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHD
AMSDVYATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSN
TSWIVPLAWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLV
HINKCPVLAPANTLRPEDAERLGIDRQRCLDNLALLRNNASVREKVVELFAEAPAFAASD
DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDD
REQQRWLQHRRAVFTPERLQDYLSELSNLYQLHEDDKEKMAQLKALYAYAQELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaaaacacaacccacttttttcattcatgactacgagacgttcggtaaacat
ccagcgcgcgatcgccccgcgcagtttgccggtgtccgtaccgatatggacttcaatatt
atcggtgagccgctcgtcatttattgtcgtccgacggatgattacctgccggaaccagaa
gcggtgatgatcaccggaattacgcctcaggtcgcgctggcaaaaggcgtcaatgaagcg
gagttcgctcgtcagatccacgacgcgttcagcgtgcccggcacctgcatcatgggctac
aacaacattcgctttgatgatgaagtcagccgcaatattttctatcgtaacttctacgat
ccttacgcctacagctggcaaaacggtaattcccgctgggatttgctggatgcactacgc
gcctgctatgccctgcgaccagaaggtatcgtgtggccggaaaacgatgatggcttgccc
agtttccgtcttgagcatctgacgaaagccaatggtatttcgcacgagcaggcgcatgat
gcgatgtccgacgtttatgccaccatcgctatggcgaagctgttcaagcaggcccagcct
aaactgtttgaatatctgttcccgctgcgtaacaaaaacaaaatttccgcgctgattgat
atcccgcaaatgaagccgctcgttcacgtgtctggtatgtttggcgcggcaaggagtaac
accagttggattgtaccgctcgcctggcatccggataaccgtaatgcggtcatcatgtgc
gatctggctggcgatatgacaccactgctggagctggacagcgcagcattacgcgagcgg
ttatacacccgccgtgatgcgctggaagcggatcagagcgcggttccactcaagctggta
cacatcaataaatgtccagtcttagcaccagccaataccttacgaccggaagatgcggaa
agattgggtatcgatcgtcaacgctgtctggataatctggcgctactgcgcaacaacgcg
agcgtcagagaaaaagtagtggagctgtttgctgaagcccctgcgtttgccgcatctgat
gatgtcgatttacggctttatgatggcttctttggcgatgctgaccgcatggcgatgaag
attattcaggagaccgccccgcagaacctgcccgcgctggatctcacgtttgccgataat
cgcctggaaccgctgctcttccgctatcgcgcccgcaatttccccggcacgctggacgac
cgcgaacagcagcgctggttgcagcatcggcgtgcggtatttacgccggagcgcttgcag
gactatctgtcagaactcagcaacctttatcagctccatgaagacgataaagagaagatg
gcacagctaaaagcgctgtacgcctatgcgcaggagctggtgggctaa
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