Pectobacterium polaris: BJK05_04705
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Entry
BJK05_04705 CDS
T05195
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppoa
Pectobacterium polaris
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppoa03016
]
BJK05_04705
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BJK05_04705
Transfer RNA biogenesis [BR:
ppoa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BJK05_04705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ASY79334
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All DBs
Position
1088864..1089988
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AA seq
374 aa
AA seq
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MNYQLITSDIGLQEVCTQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNAFGTVPTPFIDTQILAAFLGKPLSYGFAA
LVADYMSVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTQAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLECVAQTDGIADADCPPPVINLIDY
PGYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLSGQDAGMPEMLSGWRG
QLYGDELREIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacattgggttacaagaggtttgcacccaggcgcga
cgctttccgcaggtggcattggacacggagttcgtcagaacccgcacgtattatccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcacttatcgacccgttaacgatt
accgactgggctccttttcaggcgttactgcgtgacgaacaggtcactaaattcctgcat
gcgggcagcgaagatctggaagtgtttctcaatgcatttggaacagtgccgacgcctttc
atcgatacacagattctggccgcatttttaggcaaaccgctctcgtatggcttcgctgcg
ctggtggccgactacatgagcgtgacgctggataaaagcgagtcgagaacggactggctg
gcacgtccgctgagcgaaaaacagtgtgattacgccgctgccgatgtgttctatctgttg
ccgatggctattcaactggtggccgatacgcaagcagcagggtggatgaacgcggcgctg
gatgagtgtctcctgctgtgtcagcgcaaacaggatattttggcaccggcgctggcctat
cgcgaatttggcaacgcctggcagctgcgtggccggaatctggcttgccttcagcgtctg
gctgagtggcgtttgcgtaaagcgcgtgagcgagacagcgcggtgaattttgtcgtacgt
gaagagaacctgttgcaggtggcgcgttgtctgccgacttcgctgggtgaactgagctcg
ctggggctgagcggcccggaaatccgttaccacggcaaaacgctgctggagtgcgttgca
cagacggacggtattgctgatgcggattgcccaccgccggtgattaatttgatcgactat
cccggctataagaaagcgtttaaagatatcaaagcactggtgcagcgcgtgagcgaacag
agtggattatccgccgagctattggcttcacgtcgccaaattaatcgtctgctgaactgg
cactggaaattaagcgggcaagatgcgggaatgccggaaatgttgtctggctggcgcggc
cagttatatggcgatgaactgcgtgaaattgtgcaaggttattaa
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