Pectobacterium polaris: BJK05_06390
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Entry
BJK05_06390 CDS
T05195
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppoa
Pectobacterium polaris
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoa03019
]
BJK05_06390
Enzymes [BR:
ppoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJK05_06390
Messenger RNA biogenesis [BR:
ppoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJK05_06390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
PhoH
AAA_25
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ASY79643
LinkDB
All DBs
Position
complement(1480255..1484142)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQTAIAQEIEGEIAAARQKVENR
RASCPTIHYPEQLPVSQKKDEILDALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLCQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMIITAALSIQDPRERPMDKKQASDEKH
RRFADKDSDFLAFVNLWDYLRDQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCALLTGLLSHVGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLSREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKAASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKNRTQREGKDLNALKEQLKDKVQQTLSSVVDDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIESSGGPVWQEEAFQQLHEKVRAEL
NDTVVEIAKQVEQILTAVFTINKRLKGRVDMAMALALSDIKSQMTGLVFRGFVTANGWQR
LPDVLRYLQAIERRLEKLAQDVHRDRAQMLKVEHVQQAWQQWWNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
caacgtctgcgccgccgtttacagggcgcggcgaaggtcagcagcccgcaggctcagacg
gcgatcgctcaggaaattgagggggaaatcgctgccgcgcgccagaaagtcgagaaccga
cgggcgagttgtccgacgattcactatcctgaacagctacccgttagccagaaaaaagac
gagatactggatgcgctgcgtcatcatcaggtgattatcgtcgcgggtgagacgggatcg
ggtaaaaccacgcagttgccgaaaatctgtctcgaactggggcgcggggtgcacggtctg
atcggccacacgcagccgcgccgtctggctgccagaaccgttgctgaccgcattgccgcc
gagctggaaacgccgctgggtggaagcgtcggttataaagtccggtttaacgatcaggtg
agtgacaatacgctggtcaaactgatgaccgacggtattctgctggctgaaattcagcag
gatcgcctgttgatgcaatatgacacgctgatcatcgatgaagcgcacgaacgcagcctg
aatatcgattttatcatgggctatttgtgccagctgttgccaaaacgccctgatttaaaa
gtaattatcacatcggcgaccatcgatccacagcgcttctctcgccactttaataatgcg
ccaatcatcgaagtgtccggtcgaacctatccggtggacgtgcgctatcgtcccgtggtg
gaagacgccgatgacagcgagcgcgatcagctacaggcgatttttgatgcggttgatgaa
ctgacgcgcgaagggccgggggacattctggtcttcatgagcggtgaacgtgaaattcgc
gatacggcagaggcgctgactcgtctggacttgccgcataccgagatcctcccgctgtac
gcgcgcctgtcgaatcaggaacagaaccgtgtctttcagtcacatcacggccgccgcatc
gtgctggcgaccaacgtggcggaaacctcgctcaccgtgccggggattcgctatgtcatc
gatccgggcaccgcgcgcatcagccgctacagtttccgtaccaaggtacagcgcctgccg
attgaacctgtctcgcaggcgtcggcgaatcagcgtaaaggacgctgtggccgtgtcgct
gccggggtgtgtatccgtctctattccgagcaggattttctgtcgcggcctgaatttacc
gatcctgaaattcttcgtaccaatctggcttccgttattctgcaaatgacgtcgctgggg
ttaggcgatatcgccgcgttcccgtttgttgaagcaccggataaacgcaatattcaggac
ggcgtgcggttgctggaggaattaggtgcgattaatctggcagagaacgggcattaccgc
ctgacaccgcaggggcaacagctggcacaattgccgatcgatccgcgtttggcgcgaatg
gtgctggaagcgcgtaaaaccggctgtgtgcgtgaagtgatgatcatcaccgcggcgctg
tcgattcaggatccgcgcgaaagaccgatggataagaagcaggcatcggatgagaaacac
cgccgttttgccgataaagactccgattttctggctttcgtcaatctgtgggactacctg
cgtgaccagcaaaaagcgctgtcttccagccagttccgccgccagtgccgcactgatttc
ctaaactacctccgcgtgcgtgaatggcaggatatctacacgcagctgcgtcaggtcgtg
aaagaactggggctaccggtcaatagcgaacccgccgattatctgagcattcactgcgcg
ctgcttaccggcttgttgtcgcatgtcgggcagaaagatattgagaaacaggagttcagc
ggtgcgcgtaacgcgcggtttgcgattttcccaggctccgggttattcaaaaagccgcct
aagtggacgatggtggctgagctggtggaaaccagccgtctgtggggacgcattgccgcg
cgtattgaacctgagtggatcgagccgctggcccagcatctgattaagcggagctacagc
gatcctcactgggagaaggcgcagggcacggtgatggcgcaggagaaggtgacgctcttc
ggactgccgattgtcgcggcgcgcaaggtgaactacagccaaatcgatccgacgctgtcg
cgtgaaatgttcatccgccacgcgctggtggaaggtgactggcaaacgcatcacgccttt
ttccgcgccaacctcaaattgctggcggaagtggaagatctcgagcataaatcgcgccgc
cgcgacattctggtggatgacgaaacgctgtttgctttctatgaccagcggttgccgcac
gatgtggtgtcgtcacgccattttgacacatggtggaaagccgccagccgggataatgcc
gacctgcttaattttgaaaagagcatgttgattaaagacggcgcggagaaggtgagcgcg
ctggactatccgaacttctggcatcagggcagcctgaaattgcggctgtcctatcagttt
gaaccgggcgcggacgcggatggcgtcacggtacatattccgctgcctattctcaatcag
gtgcgtgaagagggctttgagtggcagattcccggcgtgcgccgcgaactgacgatcgcg
ctgattaagtcattgcctaagccgttacgtcgtaacttcgtacccgcgccgaactatgcc
gaagcgtttctggctcgcaccacgccattagagaaaggactcttggatgcgctggagcgt
gaactgcggctgatgacgggcgtcacggtaccacgcgaggcatggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgcgttattgatgagaagaatcggacgcagcgggaa
ggcaaagacctgaatgcgctgaaagagcagctcaaagataaagtgcagcaaacgctgtca
tccgtagtggacgatgggctggagcagcgcggtctgcacgtctggagcttcggttcgctg
ccggattgctatgagcagaagcgtggcggctactcggttaaagcctatccggcattggtg
gatgaaaaggatagcgtggcgattcgtctgtttgacacgccgcaccaacagcagcaggtc
atgcggcaagggctgcgccgtctgttactgctgaacattccgtcgccgattaaatatctg
catgaaaagctgccgaacaaggcgaaactcggcctctatttcaacccgtacggcaaagtg
ttggatctcatcgacgactgcatcgcttgcgcggtggataagctgattgaatcatccggt
ggcccggtctggcaggaagaggccttccagcaactgcatgaaaaagtgcgtgcggagctg
aacgatacggtggttgagatcgccaaacaggttgagcaaatcctgaccgcggtcttcacc
attaacaagcgtctgaaagggcgtgtcgatatggcgatggcgctggcgttaagcgatatc
aagagccagatgaccggtctggtgttccgtggttttgtgaccgcaaacggctggcagcgt
ctgccggacgtgctgcgttatctgcaagcgatagagcggcgtctggagaaactggcgcag
gatgtccaccgtgatcgagcgcagatgctgaaagtggagcacgttcaacaggcgtggcaa
cagtggtggaataaactgcctgcggagcgacgtgacgacgacgatgtgaaagcggtgcgc
tggatgcttgaagagctgcgcgtcagctactttgctcagcagctaggaacgccgttcccg
atctcggataagcgcgtattgcaggcgatggagcaggtagaagggtaa
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