Pectobacterium polaris: BJK05_06615
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Entry
BJK05_06615 CDS
T05195
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppoa
Pectobacterium polaris
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppoa03016
]
BJK05_06615
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BJK05_06615
Transfer RNA biogenesis [BR:
ppoa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BJK05_06615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ASY79688
LinkDB
All DBs
Position
1543983..1545917
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDITH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERTAPEVEAT
ERHDGELVREDLTALSFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVAAGSE
LDNIARQRAFTNYLPGFNIPMLPRPLSDDICSLRPDERRPVLACRVTIAADGALGDDIHF
FAAWIESKAKLAYDNVSDWLENQGEWQPQNDAIAEQIRLLQRLCLARSDWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMITANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQALLTLDGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDSRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLSVKGEVVYRQGDTLDVVIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggcaccgataaaggatttggctttcttgaagctgacgga
caaaaaagctatttcattccccctccgcacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagagcgggaaattgtcgagccagaaacgctgatcgaa
cccttcctgacccgatttgttgggcgcatccataaaaaagacgaccgcttatccattacg
cctgaccacccgctgctgaaagatgccatcccttgccgcgccgcgcgcgatatcacgcac
gattttcaggaaggtgattgggccgtagccgaaatgcgccgtcacccgttgaagggcgac
cgtggatttcatgctgaactgacgcagtacatcaccacgggcgatgacccgctggtgccg
tggtgggtgacattgtcacgtcataatctggagcgcacggccccagaggttgaagcgact
gagcgccatgacggcgaacttgtccgtgaagatctcaccgcgttgagctttgtcactatc
gacagcgccagcacggaagatatggacgacgcgctatacgtgcaggacaacggtgatggt
tcgctgcaattaaccatcgctatcgccgatccgactgcgtatgtcgcggcgggtagcgag
ctggacaacatcgcacgccagcgcgcctttaccaactatctgcccggctttaacatcccg
atgctgccgcgcccgctgtcggacgatatctgttccctgcgcccagacgagcgtcgccct
gtcctcgcctgccgcgtgacgattgccgccgacggtgcactgggtgacgacattcacttc
tttgctgcctggatcgaatccaaagccaagttagcgtatgacaacgtctctgactggctg
gaaaatcaaggcgaatggcagccgcaaaacgacgcgattgccgaacaaattcgtttgctg
caacgtctctgtctggctcgtagcgattggcgcaccacccacgcgctggtgtttaaagat
cgcccagattaccgcttcctgctgggtgagaaaggcgacgtgttggatatcgtggttgaa
catcgccgcatcgctaaccgtatcgttgaagaatccatgattacggccaacgtctgtgca
gctattgtgctgcgcgataagctgggcttcggcatctataacgtgcataacggcttcgat
cctgcctcgatcgaacaagcagttgccgtattggatacccacggtgttcaagctgacgcg
caagcgctgttgacgctggatggcttctgtacgctgcgccgcgagttggatgcccaaccg
acgcagttcctggacagccgcattcgccgcttccagtccttcgcagaagtgagcaccacg
ccggggccgcactttggtctggggctggaagcctatgccacctggacgtcgccgatccgt
aaatacggcgacatggttaaccaccgtttgttgaaagcggttatcaccggacaggctgcg
gaaaaaccgcaagacgacgttaccgtacagctggccgaacgccgccgccttaatcgtatg
gctgagcgtgatgtcggcgactggctgtacgcccgctacctcaaagataaagccggtacg
gatagtcgcttcaatgcggaaatcattgacgtcacgcgcggtggcctgcgcgttcgcctg
ctggataacggcgcagtcgcattcatcccgtcctcctttatccacgccgtgcgcgatgag
ctggtgtgcagtcaggaaatgggtaccctctcagtgaaaggcgaggtcgtctatcgtcag
ggggatacgctggacgtggtcatcgctgaagttcgtctggaaacccgcagcatcgtggca
aaacctgccgcctaa
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