Pectobacterium polaris: BJK05_07700
Help
Entry
BJK05_07700 CDS
T05195
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJK05_07700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_07700
Enzymes [BR:
ppoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJK05_07700
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJK05_07700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASY82561
LinkDB
All DBs
Position
1782385..1785834
Genome browser
AA seq
1149 aa
AA seq
DB search
MPENYRYSLPPKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQ
QFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPH
SFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRRD
AEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGNIEQSAERFWQDIQ
QRFESRRVDPMRPLLPSDSLWLRVDGLFTELKAWPRVQLRTDTLPEKAANVNLAYLPLPE
LAIQHQQKSPLDALRRFIEQFEGQIIFSVESEGRRETLQELLARIKLNPTLINTLEQAQE
RGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA
PLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLKETQEGKVDILIGTHKLLQSDVHW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILRETLRGGQVYYLYNDVENIEKATQRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DDQSGQMTSVGFSLYMELLESAVEALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDV
NTRLSLYKRIASAKTTVELDELKVELIDRFGLLPDASRYLLQIAALRQQAQALGIRRIEG
NEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLLG
NMAQHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattaccgttattcgctgccgcccaaagcgggtgagcagcgcctgctgggc
cagttaaccggcgctgcctgcgccgttgaatgtgcagaaatcattgaacgccacgccggg
ctagtggtgcttatcgcgccggatatgcaaaacgctctgcgattgcgtgatgaaattcag
caatttaccgaccagcacgtcaccaccctgcctgactgggaaacgctgccctacgatagt
ttttctccgcatcaggaaattatttcgacccgcctttccacgctctatcaattgcccaac
atgacgcgcggcgttctgattctgccggtcaacacgctaatgcagcgcgtttgtccgcac
agtttcctgcacggccatgcgctggtattgaaaaaaggccagcgcctctcgcgtgataag
ctgcgttcgcagttagagcaggcgggctaccgcagcgtcgatcaggtcatggaacacggt
gaatatgccacacgcggcgcgctgctggatctgttcccgatggggagcgaagagccctac
cgtatcgatttctttgacgacgagatcgacagcctgcgtctgtttgatgtggatacgcag
cgcacgctgaatgaagtgccgcacattaatctgctgcccgcccacgaattcccgaccgat
aaaaccgccatcgaacttttccgcagccagtggcgcgagcagttcgaggtgcgacgcgat
gccgagcacatttatcagcaggtcagcaaaggcgtctggcccgccgggatcgaatactgg
cagccgttattcttcagtgagccactgccgtcgttgttcagctatttcccgaacaacacg
ttgatcgtcaacacgggcaatatcgaacagagcgccgagcgtttctggcaggatattcag
cagcgttttgaaagccgtcgtgtcgatccgatgcgtccgctgctgccgtcggattcactc
tggctgcgcgtagacggtctgttcactgagctgaaagcgtggccgcgcgtgcagttgaga
accgacacgctgccggaaaaagccgccaacgtgaatctggcctatctgccgctgccggag
ctagcgattcagcatcagcagaaatccccgctggacgcgctacgccgttttatcgaacag
ttcgaaggccagattattttctccgtcgagagcgaaggccgacgtgaaacgctgcaagag
ctgctggcgcgtatcaaactgaacccgacgctcatcaacacgctggagcaggctcaggag
cgcggcacttacctgatcatcggtgccagcgaacacggttttatcgacacgctgcgtcag
cgtgcgttgatctgcgaaagcgatctgctgggtgagcgcgtcagtcgccgccgtcaagat
agccgccgcacgattaataccgatacgctgatccgcaatctggcggaactgcggccgggg
cagcccgtcgtccacctcgaacacggcgtgggccgctatgctgggctaaccacgctagaa
gccggcggcatcaaggccgaatacctgattttgacctatgcgggtgaagacaagctgtac
gttcctgtttcctcactgcatttgatcagccgctacgcgggcggtgccgatgagaatgcg
ccgctgcataaattgggtggcgatgcctggtcacgcgcgcggcaaaaagcggcagaaaga
gtgcgcgatgtcgccgccgagctgctggatatttatgcccagcgtgcggcgaaaagcggc
tttgcgtttaagcatgataaaactcagtatcagcttttctgcgaaagtttccccttcgaa
accacgcccgatcaagcgcaggccatcaacgccgtgttaagcgacatgtgccagccgctg
gcgatggatcgtctggtgtgtggcgatgtcggctttggtaaaaccgaagtggcgatgcgc
gccgcctttttagcggttgaaaaccataagcaggttgccgttctggtgccaacgacgctg
ttggcacagcagcactttgacaacttccgcgatcgctttgccaactggccggtgaagatt
gaaatgatctcccgcttccgcagcgcgcgtgaacaaactcaggtgctgaaggaaacgcag
gaaggcaaagtcgatattctgattggcacccataaactgttacagagcgacgtgcactgg
cgtgatttagggctgctgattgtggacgaagagcatcgcttcggcgtgcgtcacaaagag
cgcatcaaagcgatgcgggcagatgtcgatatcctgacgctgaccgctacgccgattccg
cgtacgctcaacatggccatgagtggaatgcgcgatctgtcgatcatcgccacgccacca
gcccgccgtttagcggtgaaaaccttcgtccgcgaatatgacaatttggtggtgcgtgaa
gcgattctgcgtgaaactcttcgcggtgggcaggtgtattacctctataacgacgtcgaa
aatatcgagaaagccacccagcggctggcagaattggtgccggaagcacgcatcgcgatc
ggtcacggtcagatgcgcgaacgtgagctggaacgggtcatgaacgacttccaccaccag
cgttttaacgtgctggtatgtaccacgatcatcgaaacggggatcgatataccgagcgct
aacaccattatcatcgagcgtgccgatcacttcggtctggcacagttgcaccagttacgt
ggtcgcgtcggccgttcccaccatcaggcttacgcctatctgctgacgccaaatcctaaa
gcgatgagcaccgatgcgcagaagcgtctggaagcgattgcctcattggaagacctcggc
gctggttttgcattggcaacgcacgatctggaaatccgtggcgcaggcgaactgctcggg
gacgatcagagcggacaaatgaccagcgttggcttctcgctctatatggaactgctggaa
agcgccgtcgaggctctgaaagcgggccgggagccgtcgctggaagatctgatcaacagc
cagaccgacgtcgaactgcgcttgcctgccctgctgcctgatgatttcatccccgacgtt
aatacgcgcctgtcgttatacaaacgtatcgccagcgcgaaaaccaccgtcgagctggat
gagttgaaggtcgaactgatcgatcgcttcggtctccttcccgatgcaagtcgctatctg
ttgcagattgccgccttgcgtcagcaggcacaggcgctgggtattcgccgtatagaaggc
aatgagaaaggtggatttatcgaattcagcgagcaaaatcgcgtcgatccgtcccatctt
atcggcctgttacagcgcgatccgggcacctaccgtcttgatggcccaacccgtctgaaa
ttcatgaaggatttgagtgaccgtccgcagcgcatcgagtttatcggttcactgctgggg
aacatggcgcagcatacgctggcggcgtag
DBGET
integrated database retrieval system
