Pectobacterium polaris: BJK05_07855
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Entry
BJK05_07855 CDS
T05195
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJK05_07855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoa03019
]
BJK05_07855
03009 Ribosome biogenesis [BR:
ppoa03009
]
BJK05_07855
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJK05_07855
Messenger RNA biogenesis [BR:
ppoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJK05_07855
Ribosome biogenesis [BR:
ppoa03009
]
Prokaryotic type
rRNA processing factors
BJK05_07855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ASY79914
LinkDB
All DBs
Position
1814673..1817966
Genome browser
AA seq
1097 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEE
TTPPVAKEAPAVAKATEDAQPGLFSRFLSALKGVFASEPVEKTVDAADDKKAEEEKSTEG
QRSERRNSRRQGNNRRDRGSRDNRDNRDNRDNRDNREQRDDQRRNKRQNEEAVTDTRAVE
NAEKSSSEEQPRREPRAERQRRRQDERRQAPAEAKAQPVIDDSDDNAAEQDTPTQVMPRR
QRRQLTQKVRVQSETQQDTLSDNTAPVADVSQQTQAYVKPNDVAVDNNEVDNEQNDANRA
NAENGGMPRRSRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGKVWVSYP
LAQPQQAENQHQQDENVAAIETPLLPAVVEAAVTAQADTVESNAVENVVITEAVVQEDVA
VTATAQSADVIQDSNVANVELSTAGEETAIEPVTENTAIDDAIAAVAVNAVEEAPTADTV
ATQVAEDVQTVDANATEKADLAEPVATPAVSAVQEVSPPQSVQDEPVTTTSEQQIVEESV
LSETKATAVADVDQPRYKLHATAPMTKAPAPAYHAEPARHSDWVRPDYPFSGKGSAGGHA
AVNQSTAPATKPTPVSE
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatatcgaaagtccaggccatgagcagaagaaagcaaat
atctacaaaggtaaaatcactcgtatcgaacctagtcttgaagccgcttttgttgattac
ggcgcagaaagacacggtttcctccctcttaaagaaatcgcccgcgaatacttccctagc
aactattcttcccacggtcgtcctaacatcaaagacgtgttacgtgaaggtcaggaagtc
attgttcaggtagacaaagaagagcgtggcaacaaaggcgcggcactgaccacctttatc
agtctggcaggcagctatctggtcttaatgccgaataaccctcgtgcaggcggtatctca
cgccgtatcgaaggtgacgatcgtaccgagctcaaagaagcgttgggatcgttgcaactg
cccgatggcatggggcttattgttcgtaccgctggtgtgggcaaatccgctgaagcgctg
caatgggatttggctttccgtctgaaacactgggacgcgatcaaaaaagccgccgaaggc
cgctctgcaccattcctgatccatcaggaaagtaatgtaatcgtccgtgctttccgtgac
tatctgcgcccggacattggcgaaatcctgatcgacaacccaaaaattctcgatctggcg
aaagaacatatttctgcgctgggtcgccccgatttcagcagcaaaatcaaattgtacagt
ggcgaaattccgcttttcagccactatcaaatcgaatcgcagatcgaatcggctttccag
cgtgaagttcgcctgccgtccggtggctctatcgttatcgatacgaccgaagcgctgaca
gcaatcgatatcaactccgcccgtgcaacgcgcggtggtgatattgaagaaactgcattc
aataccaaccttgaagccgcagacgaaattgcccgccagttgcgcttgcgtgacctcggt
ggcctgatcgttatcgacttcatcgatatgacacccgttcgtcaccagcgtgaagttgaa
aaccgcctgcgcgactctgtacgtcaggatcgtgcgcgtattcagatcggccggatttcc
cgctttggcttgctggaaatgtcgcgtcagcgcctaagcccttcgctgggtgaatccagc
caccacgtctgcccacgctgtagcggcacaggcacgattcgtgacaatgaatcactttcg
ctgtctattcttcgtctgatcgaagaagaagcgctgaaagaaaataccaaagaagtccac
gcgattgttccagttcagattgcgtcttatctgctgaacgagaagcgtgatgccgttaac
gccattgagaaacgtcaaggtggcgtgcgcgcgatcatcgtgccacatgacggtatgcag
actccgcactactccgtagttcgcgtccgtaaaggcgaagaaaaaccgacgctcagctat
ttgctgcctcagcgtttggaaacggaaacgcagcagttgcaagacgaacaaacgatcgaa
cgtaaacagcctgaacaaccggctttagcaacgtttagcatggctgaaatgccagaagaa
accacgcctccagttgccaaagaggctcctgctgtagcgaaagccacagaggatgctcaa
ccgggtctctttagtcgtttcctcagtgccttgaaaggcgtattcgcttctgaacctgtt
gaaaaaacagtggatgctgctgacgataagaaagcagaagaagagaaatctactgagggt
cagcgttctgaacgtcggaactcacgccgtcagggtaataatcgccgcgatcgtggctca
cgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgaacagcgtgat
gatcagcgccgtaataagcgacaaaacgaggaagccgttactgacacccgcgctgtggaa
aatgcggagaaatccagttcggaagaacagccgcgtcgtgaaccacgtgccgagcgtcag
cgtcgtcgtcaggatgagcgccgacaggctccggctgaggcaaaagcacagccagtcatt
gatgattctgatgacaatgcggccgagcaggatacaccgactcaggttatgccacgccgt
caacgccgtcagttgacgcagaaagtacgtgtccagtctgaaactcagcaggataccctc
tctgataacactgcgcctgttgctgatgtatcccagcagactcaagcttacgtcaagcca
aacgatgttgcggtagacaataacgaggtcgataacgagcagaacgatgcaaatcgtgcc
aatgccgagaatggcggtatgccgcgtcgttcacgtcgttcgccgcgtcacctgcgcgtc
agcggccagcgccgtcgccgctatcgtgatgagcgttacccgtctcagtcgccaatgcag
ttggaatttgctgccgcatcaccggaaatggcatcaggaaaagtgtgggttagctatcct
cttgcacagccgcagcaggctgaaaaccagcatcagcaggacgaaaacgttgcagcaatt
gaaacaccgctgttaccagccgttgtcgaagccgccgtgactgcacaagcagacacagtg
gaatccaacgcggttgaaaacgttgtgattactgaagcagtggtccaggaagacgtcgcg
gtaaccgcaacagcacagtctgccgacgttatccaggatagcaatgtagcgaatgtcgag
ctgagtaccgctggcgaagaaaccgccatcgagccagttaccgagaacaccgctatcgat
gatgctatcgctgcagttgccgtgaatgccgtagaggaagcaccaactgctgatactgtc
gctactcaggtcgctgaagatgtgcaaaccgttgacgctaatgcaaccgagaaagccgat
ctggcagagccagttgctacccctgcggtttccgcagtacaggaagtcagcccgccgcaa
agcgttcaggatgagcctgtaacgacgaccagcgaacagcagattgtggaagagtcggta
ttgagcgaaacaaaagcaactgcggttgctgatgttgatcagcctcgttataagctccat
gcgacagcaccaatgactaaagcgccagcgccggcataccatgctgagcctgctcgacac
agtgattgggtacgtccagactatccgttctcaggaaaaggttcggcaggcggtcatgcg
gcagttaaccaatcaactgcgccagcaaccaagcctacacctgtcagcgagtaa
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