Pectobacterium polaris: BJK05_09560
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Entry
BJK05_09560 CDS
T05195
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa00040
Pentose and glucuronate interconversions
ppoa01100
Metabolic pathways
ppoa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BJK05_09560
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BJK05_09560
Enzymes [BR:
ppoa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
BJK05_09560
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GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_43
Beta_helix
LRR_R13L1-DRL21
DERM
Motif
Other DBs
NCBI-ProteinID:
ASY80232
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All DBs
Position
complement(2183108..2184676)
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AA seq
522 aa
AA seq
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MFRTVIGTGRLRTCAVAIALSGLVLSGCDNSQQPVAETTPPDLQVKTAPFGWAAQYHNTD
GKFYATTGGEGALENSIYVVTSRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGSDAAAAST
QLNLLKRQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSQTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWIDHCTFTDGEYPD
HLEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFDQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSTLQEAEKVAATNSGKAVPAWAL
ETCTNELEWSPPYTYSAGKSIAAVEKYVLDNAGAGKLDIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattgggactggtcgtttacgtacctgtgcggtagctattgccctt
tccgggcttgtgctctccgggtgtgataatagtcagcagccagtggcagaaacgaccccg
ccagatttgcaggtgaaaacggcaccgtttggctgggctgcgcaatatcataatacggat
ggtaaattttatgcgacgacggggggcgaaggcgcgcttgaaaatagcatttatgtcgtc
accagtcgtcaggaattaaaagacgcattaaataatatccgcagcccccgctatatcgcc
ggtgatgccgatgcggaattgaaagcaaaattagaaccaaaaattatctactggcaaggc
actatccgtggtgatgacttaggcaatggacgctatgccaatgctgaggattataaaact
aaaccgaataaaacaacgtttgattttgatttatacgtcaaagcgttcgatcaaaattat
atggcgcagttgaaagcgacggcggatgccggtggaagcgatgcagctgcggccagcaca
cagcttaacctgttgaaaaggcagaatggtcaacgttcgcagtatgccaacaaccaaaag
gcgcagattcaatttcaggtaccacccaataccacgattttaggcgtgggtagcgaagca
aaactggtggaaggctatttatccctcaataccctgagccagacgttcggcaaaacggat
aacagcaacatcattatccgcaatattacgtttcaggcgccgcgtgactttgctccagcc
tgggatgcgggcgacggcgataaaggcaactggaatgcgcgttatgattccgtatcgatt
aatgccagtaaaaatgtctggatcgaccactgcacgtttacggacggtgaatatccagat
catttagaaccagtgctatttggtaagcatatccagcgccacgacggcttgctggatata
gaagacggtgccgattacctgacgatttcctacaacatcttcgaccaacatgacaaaacg
gtattaattggctccggcgatggtgataaaggggaataccgaattacgtttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgcgtgcgttttggtcaggtgcatttgctg
aataactaccatcgtggggcaacggatacgaattaccccattctgtatgccattgggatg
ggcttcgattcatccattctttccgaaagtaacgtgtttaatttccagggcggcggggcg
gatgaaaagttgattatcggtgcctacaaaggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttaaatcaaatcgcattagacaaatgcagcacattg
caagaagccgagaaggtcgccgccacaaattctgggaaagccgtgccagcatgggcgctg
gaaacctgcaccaatgaactggaatggagcccgccttatacgtatagcgccgggaaatcc
attgccgccgttgagaaatacgtcctggacaatgccggcgcggggaaactggatattgct
ctgccgtag
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